View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21390_low_21 (Length: 266)
Name: NF21390_low_21
Description: NF21390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21390_low_21 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 30162948 - 30163194
Alignment:
| Q |
18 |
aataatgtttgatgccttgccttgaaacgttagaactgctactgctaggacctagggacaatgttggatttatatgggactctgttgcactctatgcata |
117 |
Q |
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| T |
30162948 |
aataatgttttatgtcttgccttgaaacgttagaactgctactgctagggcctggggacaatgttggatttatatgggactctgttgcactctatgtata |
30163047 |
T |
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| Q |
118 |
agctctttaactctctgaaagttaaacgcttttcgttttgcagcatcaaacaaaaagtatatgcctcgagaaaaattggagagtttatctgtggtttaat |
217 |
Q |
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| T |
30163048 |
agctcttttactct--gaaagttaaatgcttttcgttttaaagcatcaaacaaaaagtatatgcctcaagaaaaattggagagtttacttgtggtttaat |
30163145 |
T |
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| Q |
218 |
gctatttaagaaaatatttcttccatctttattttgatatccttgagtt |
266 |
Q |
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| T |
30163146 |
gctattgaagaaaatatttcttccatctttattttgataaccctgagtt |
30163194 |
T |
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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 25384757 - 25384711
Alignment:
| Q |
61 |
gctaggacctagggacaatgttggatttatatgggactctgttgcac |
107 |
Q |
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| T |
25384757 |
gctagggcctagcgacaatgttggatttatatgggactctgttgcac |
25384711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 266
Target Start/End: Complemental strand, 25488534 - 25488475
Alignment:
| Q |
207 |
tgtggtttaatgctatttaagaaaatatttcttccatctttattttgatatccttgagtt |
266 |
Q |
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| T |
25488534 |
tgtggtttaatgcaattgaagaaaatatcactcccatctttattttgatatcctcgagtt |
25488475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 25384658 - 25384606
Alignment:
| Q |
177 |
tatgcctcgagaaaaattggagagtttatctgtggtttaatgctatttaagaa |
229 |
Q |
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| T |
25384658 |
tatgcctcaagaaaaattgaagagtttacttgttgtttaatgctatctaagaa |
25384606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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