View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21390_low_23 (Length: 263)
Name: NF21390_low_23
Description: NF21390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21390_low_23 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 8 - 263
Target Start/End: Original strand, 30315295 - 30315550
Alignment:
| Q |
8 |
gagcagagagaatatgaggaagatgaacaacaacaagaaagaagccaacaagtacaaaggtatagggctaggttgtctccaggtgatgtttatgtaattc |
107 |
Q |
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| T |
30315295 |
gagcagagagaatatgaagaagatgaacaacaacaagaaagaagccaacaagtacaaaggtatagggctaggttgtctccaggtgatgtttatgtaattc |
30315394 |
T |
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| Q |
108 |
cggcaggtcatccaattgttgtaactgcttcttcagatctctctttgcttggatttggtatcaatgctgagaacaatcagaggaacttccttgctggtat |
207 |
Q |
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| T |
30315395 |
ccgcaggtcatccaattgtcgtaaaggcttcctcggatctctctttgcttggatttggtatcaatgctgagaacaatcagaggaacttccttgctggtat |
30315494 |
T |
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| Q |
208 |
atactatattctcactcagtctctttccttctgtatggcctaattacaacagtttt |
263 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
30315495 |
atactatattctcactcggtctctttccttctgtatggcctaattacaatagtttt |
30315550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 8 - 262
Target Start/End: Original strand, 30286714 - 30286962
Alignment:
| Q |
8 |
gagcagagagaatatgaggaagatgaacaacaacaagaaagaagccaacaagtacaaaggtatagggctaggttgtctccaggtgatgtttatgtaattc |
107 |
Q |
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| T |
30286714 |
gagcagagagaatatgaggaagatgaacaacaacaagaaagaagccaacaagtacaaaggtatagggctaggttgtctccaggtgatgtttatgtaattc |
30286813 |
T |
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| Q |
108 |
cggcaggtcatccaattgttgtaactgcttcttcagatctctctttgcttggatttggtatcaatgctgagaacaatcagaggaacttccttgctggtat |
207 |
Q |
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| T |
30286814 |
cggcaggtcatccaattgtcgtaactgcttcttcggatctctctttgcttggatttggtatcaatgcggagaacaatcaaaggaacttccttgctgg--t |
30286911 |
T |
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| Q |
208 |
atactatattctcactcagtctctttccttctgtatggcctaattacaacagttt |
262 |
Q |
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| T |
30286912 |
atactgtattctcactcagtctct----ttctgtatggcctaattacaatagttt |
30286962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 8 - 262
Target Start/End: Original strand, 30291748 - 30291996
Alignment:
| Q |
8 |
gagcagagagaatatgaggaagatgaacaacaacaagaaagaagccaacaagtacaaaggtatagggctaggttgtctccaggtgatgtttatgtaattc |
107 |
Q |
| |
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|||||||||||||||||||||||||||||| || |||| |||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
30291748 |
gagcagagagaatatgaggaagatgaacaagaagaagagagaagccaacaagtgcaaaggtacagggctaggttgactccaggtgatgtttatgtaattc |
30291847 |
T |
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| Q |
108 |
cggcaggtcatccaattgttgtaactgcttcttcagatctctctttgcttggatttggtatcaatgctgagaacaatcagaggaacttccttgctggtat |
207 |
Q |
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| T |
30291848 |
cagcaggttatccaaatgtcgtaaaagcttcgtcggatctctctttgcttggatttggtatcaatgctgagaacaaccagaggagcttccttgctgg--t |
30291945 |
T |
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| Q |
208 |
atactatattctcactcagtctctttccttctgtatggcctaattacaacagttt |
262 |
Q |
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| T |
30291946 |
atactgtattctcactcagtctct----ttctgtatggcctaattacaatagttt |
30291996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 8 - 262
Target Start/End: Original strand, 30304382 - 30304630
Alignment:
| Q |
8 |
gagcagagagaatatgaggaagatgaacaacaacaagaaagaagccaacaagtacaaaggtatagggctaggttgtctccaggtgatgtttatgtaattc |
107 |
Q |
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|||||||||||||||||||||||||||||| || |||| |||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
30304382 |
gagcagagagaatatgaggaagatgaacaagaagaagagagaagccaacaagtgcaaaggtacagggctaggttgactccaggtgatgtttatgtaattc |
30304481 |
T |
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| Q |
108 |
cggcaggtcatccaattgttgtaactgcttcttcagatctctctttgcttggatttggtatcaatgctgagaacaatcagaggaacttccttgctggtat |
207 |
Q |
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| T |
30304482 |
cagcaggttatccaaatgtcgtaaaagcttcgtcggatctctctttgcttggatttggtatcaatgctgagaacaaccagaggagcttccttgctgg--t |
30304579 |
T |
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| Q |
208 |
atactatattctcactcagtctctttccttctgtatggcctaattacaacagttt |
262 |
Q |
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| T |
30304580 |
atactgtattctcactcagtctct----ttctgtatggcctaattacaatagttt |
30304630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 26 - 206
Target Start/End: Original strand, 30299187 - 30299370
Alignment:
| Q |
26 |
gaagatgaacaacaacaagaa---agaagccaacaagtacaaaggtatagggctaggttgtctccaggtgatgtttatgtaattccggcaggtcatccaa |
122 |
Q |
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||||||||||||||| ||||| |||||||||||||| |||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30299187 |
gaagatgaacaacaagaagaagagagaagccaacaagtgcaaaggtacagagctaggttgtctccaggtgatgtgtatgtaattccggcaggtcatccaa |
30299286 |
T |
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| Q |
123 |
ttgttgtaactgcttcttcagatctctctttgcttggatttggtatcaatgctgagaacaatcagaggaacttccttgctggta |
206 |
Q |
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| T |
30299287 |
ctgtcgttagcgcttcctcggatctctctttgcttggatttggtatcaatgctgagaacaacgagaggaacttccttgcaggta |
30299370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 208
Target Start/End: Original strand, 46810199 - 46810333
Alignment:
| Q |
74 |
gctaggttgtctccaggtgatgtttatgtaattccggcaggtcatccaattgttgtaactgcttcttcagatctctctttgcttggatttggtatcaatg |
173 |
Q |
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|||||| |||||||||| || ||| | |||||||||||||||| ||| | | ||| |||||| || ||||| ||| ||||| ||||||||||||| |
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| T |
46810199 |
gctaggctgtctccaggcgacgttgttataattccggcaggtcacccagtagccataaatgcttcctcgaatctcaatttccttggctttggtatcaatg |
46810298 |
T |
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| Q |
174 |
ctgagaacaatcagaggaacttccttgctggtata |
208 |
Q |
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|||||||||||||||| ||||| ||||| |||||| |
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| T |
46810299 |
ctgagaacaatcagagaaactttcttgcaggtata |
46810333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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