View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21390_low_24 (Length: 250)
Name: NF21390_low_24
Description: NF21390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21390_low_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 233
Target Start/End: Complemental strand, 30743296 - 30743076
Alignment:
| Q |
13 |
aatatactagattctaaaccgtttcttatttgatttgtgtgaaattcgtactacaatggctcatacccttacattggtacttttatttgcaccatcccaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30743296 |
aatatactagattctaaaccgtttcttatttgatttgtgtgaaattcgtactacaacggctcatacccttacattgttacttttatttgcaccatcccaa |
30743197 |
T |
|
| Q |
113 |
ctctacttaaagagctctctccatgatgttgggtactcaattcaagagcctctgaatcacgctgaaaatttcatgcctgaacatgcacaaataatcaagc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30743196 |
ctctacttaaagagctctctccatgatgttgggtactcaattcaagagcctctgaatcacgctgaaaatttcatgcctgaacatgcacaaataatcaagc |
30743097 |
T |
|
| Q |
213 |
aattttgtacaagagtcatct |
233 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
30743096 |
aattttgtacaagagtcatct |
30743076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 165
Target Start/End: Original strand, 7558411 - 7558564
Alignment:
| Q |
13 |
aatatactagattctaaaccgtttcttatttgattt--gtgtgaaattcgtactacaatggctcatacccttacattggtacttttatttgcaccatccc |
110 |
Q |
| |
|
||||||||| || ||| || ||||||||||||||| |||||||||| || |||||||||||| |||||||||||| |||||||| ||| ||| | |
|
|
| T |
7558411 |
aatatactaaatattaagccatttcttatttgattttagtgtgaaattgcaacagcaatggctcatatccttacattggttcttttattggcattatctc |
7558510 |
T |
|
| Q |
111 |
aactctacttaaagagctctctccatgatgttgggtactcaattcaagagcctct |
165 |
Q |
| |
|
|||| ||||||| |||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7558511 |
aactatacttaa-gagctccctccatgatgttgggaactcaattcaagagcctct |
7558564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 161
Target Start/End: Complemental strand, 8993513 - 8993419
Alignment:
| Q |
66 |
caatggctcatacccttacattggtacttttatttgcaccatcccaactctacttaaagagctctctccatgatgttgggtactcaattcaagagc |
161 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||| ||||| || || |||| |||||||||||||| |||| ||||||||||||||| |
|
|
| T |
8993513 |
caatggctcatacccttacattggctcttttatttgcattatctcaactata-tttaagaactctctccatgatgctgggaactcaattcaagagc |
8993419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University