View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21390_low_25 (Length: 247)
Name: NF21390_low_25
Description: NF21390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21390_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 44396022 - 44395829
Alignment:
| Q |
1 |
actaaaagtaaccaaatctacaataatctctttcttcttctgaggttccatagccattgtttcaaaagttgcaggatgttcaaaaacaatgtgactccac |
100 |
Q |
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| T |
44396022 |
actaaaagtaaccaaatcttcaataatctctttcttcttctgaggttccatagccattgtttcaaaagttgcaggatgttcaaaaacaatgtgactccac |
44395923 |
T |
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| Q |
101 |
atagtttgcttatagctaggccatttgtaaccaggactgtttgtatacaatttcctctgtctgttcctcaaacgaatctctttcccttctttca |
194 |
Q |
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| T |
44395922 |
atagtttgcttatagctaggccatttgtaaccaggactgtttgtatacaatttcctctgtctgttcctcaaacgaatctctttcccttctttca |
44395829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 227
Target Start/End: Original strand, 44396104 - 44396139
Alignment:
| Q |
192 |
tcaacaatgattgctgctatggctaatttgttgggt |
227 |
Q |
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| T |
44396104 |
tcaacaatgattgctgctatggctaatttgttgggt |
44396139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 53395452 - 53395396
Alignment:
| Q |
13 |
caaatctacaataatctctttcttcttctgaggttccatagccattgtttcaaaagt |
69 |
Q |
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| T |
53395452 |
caaatcttccataatctctttcttcttcataggatccatagccaatgtatcaaaagt |
53395396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 1800718 - 1800681
Alignment:
| Q |
62 |
tcaaaagttgcaggatgttcaaaaacaatgtgactcca |
99 |
Q |
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| T |
1800718 |
tcaaaagtcgcaggatgttcaaaaacaatgtgactcca |
1800681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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