View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21390_low_3 (Length: 535)
Name: NF21390_low_3
Description: NF21390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21390_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 18 - 525
Target Start/End: Complemental strand, 53803667 - 53803165
Alignment:
| Q |
18 |
atatttagtatccgaccatgtctcgaatatgattttcatgccgtgcaaaaccaaaaaatgattgaaaatggacaggacagcctatgagagactatttctt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
53803667 |
atatttagtatccgaccatgtctcgaatatgattttcatgccgtgcaaaaccaaaaaatgattgaaaatggacag-----cctatgagagactatttctt |
53803573 |
T |
|
| Q |
118 |
tatatcaaagttcatttatttatgtttcttttgaagtttgttttgaacattaatgcacctatattttcttaaatctaacagattgttatattcttttgat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53803572 |
tatatcaaagttcatttatttatgtttcttttgaagtttgttttgaacattaatgcacctatattttcttaaatctaacagattgttatattcttttgat |
53803473 |
T |
|
| Q |
218 |
ttctttttcccgtctacttgctgacgaaaggtttctcggaatgtggaaagatatgcaagaatgttacaaacgccagtatcaggaaattgttgaaaccaaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53803472 |
ttctttttcccgtctacttgctgacgaaaggtttctcggaatgtggaaagatatgcaagaatgttacaaacgccagtatcaggaaattgttgaaaccaaa |
53803373 |
T |
|
| Q |
318 |
gctttagatgtctcctcatttaacagaaagccttgcaatgctaatattgatgcagcaataaagctcaaatccgagttacagaaatggaacttaagcttct |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
53803372 |
gctttagatgtctcctcatttaacagaaagccttgcaatgctaatattgatgcagcaataaagctcaaaaccgagttacagaaatggaacttaagcttct |
53803273 |
T |
|
| Q |
418 |
tagattggattcaagctcaaaagttccatgtgaaagccctgaatgattggctagtaagatgtctaatgtatgaatctgaagaactacagaatgattcaac |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53803272 |
tagattggattcaagctcaaaagttccatgtgaaagccctgaatgattggctagtaagatgtctaatgtatgaatctgaagaactacagaatgattcaac |
53803173 |
T |
|
| Q |
518 |
tccctttg |
525 |
Q |
| |
|
|||||||| |
|
|
| T |
53803172 |
tccctttg |
53803165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University