View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21390_low_31 (Length: 205)

Name: NF21390_low_31
Description: NF21390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21390_low_31
NF21390_low_31
[»] chr4 (48 HSPs)
chr4 (14-205)||(24470461-24470652)
chr4 (14-205)||(24421263-24421454)
chr4 (14-205)||(24470269-24470460)
chr4 (29-205)||(24477400-24477576)
chr4 (14-117)||(24421159-24421262)
chr4 (14-144)||(24470653-24470783)
chr4 (12-198)||(24477503-24477689)
chr4 (14-148)||(24420792-24420926)
chr4 (14-146)||(24471084-24471216)
chr4 (14-148)||(24420408-24420542)
chr4 (14-144)||(24420940-24421070)
chr4 (47-141)||(24470973-24471067)
chr4 (14-141)||(24420559-24420686)
chr4 (12-148)||(24420504-24420640)
chr4 (12-144)||(24420652-24420784)
chr4 (12-148)||(24470986-24471122)
chr4 (12-100)||(24477457-24477545)
chr4 (14-120)||(24420724-24420830)
chr4 (14-148)||(24406441-24406581)
chr4 (35-148)||(24420888-24421001)
chr4 (71-148)||(24470949-24471026)
chr4 (17-141)||(24421231-24421355)
chr4 (12-148)||(24470699-24470835)
chr4 (36-148)||(24477238-24477350)
chr4 (26-129)||(24420331-24420434)
chr4 (12-147)||(24421033-24421168)
chr4 (17-148)||(24470560-24470691)
chr4 (14-141)||(24470749-24470875)
chr4 (33-144)||(24470863-24470974)
chr4 (14-111)||(24406382-24406479)
chr4 (71-148)||(24420600-24420677)
chr4 (41-141)||(24420751-24420851)
chr4 (12-144)||(24421180-24421312)
chr4 (12-144)||(24421276-24421408)
chr4 (12-144)||(24470315-24470447)
chr4 (17-141)||(24470368-24470492)
chr4 (14-141)||(24477098-24477228)
chr4 (12-139)||(24421089-24421216)
chr4 (98-141)||(24477011-24477054)
chr4 (17-126)||(24406517-24406626)
chr4 (71-148)||(24476806-24476883)
chr4 (50-126)||(24476978-24477054)
chr4 (80-115)||(24481923-24481958)
chr4 (80-115)||(24482055-24482090)
chr4 (26-144)||(24477605-24477723)
chr4 (74-115)||(24481749-24481790)
chr4 (41-141)||(24420847-24420947)
chr4 (75-115)||(24482157-24482197)
[»] scaffold0879 (8 HSPs)
scaffold0879 (14-117)||(4512-4615)
scaffold0879 (119-205)||(4425-4511)
scaffold0879 (14-144)||(4704-4834)
scaffold0879 (26-141)||(4428-4543)
scaffold0879 (12-144)||(4462-4594)
scaffold0879 (12-147)||(4606-4741)
scaffold0879 (12-139)||(4558-4685)
scaffold0879 (35-126)||(4773-4864)
[»] chr2 (14 HSPs)
chr2 (12-144)||(41900301-41900433)
chr2 (47-205)||(41900288-41900446)
chr2 (12-126)||(41900511-41900625)
chr2 (12-141)||(41899872-41900001)
chr2 (26-108)||(41899953-41900035)
chr2 (12-141)||(41900112-41900241)
chr2 (71-139)||(41899826-41899894)
chr2 (92-144)||(41900013-41900065)
chr2 (47-144)||(41900157-41900254)
chr2 (47-144)||(41900541-41900638)
chr2 (14-90)||(41899827-41899903)
chr2 (26-118)||(41900279-41900371)
chr2 (41-141)||(41899968-41900068)
chr2 (23-99)||(41900106-41900182)
[»] chr1 (15 HSPs)
chr1 (12-138)||(11902099-11902225)
chr1 (47-126)||(11879442-11879521)
chr1 (12-138)||(11879455-11879581)
chr1 (41-126)||(11902080-11902165)
chr1 (29-140)||(11901903-11902014)
chr1 (47-126)||(11902038-11902117)
chr1 (14-148)||(11904968-11905102)
chr1 (81-138)||(11881938-11881995)
chr1 (14-111)||(11882171-11882268)
chr1 (81-138)||(11891172-11891229)
chr1 (14-111)||(11891405-11891502)
chr1 (12-129)||(52821356-52821473)
chr1 (50-138)||(52818944-52819032)
chr1 (47-135)||(52821302-52821390)
chr1 (47-111)||(52821569-52821633)
[»] scaffold1918 (3 HSPs)
scaffold1918 (47-140)||(425-518)
scaffold1918 (12-90)||(427-505)
scaffold1918 (12-81)||(319-388)


Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 48)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 24470461 - 24470652
Alignment:
Q  14 ccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctc 113  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24470461 ccaccaacaccctcacctcccccgccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatatgtctacaagtcaccacctcctc 24470560  T
Q  114 catctccttcacctcccccaccatatgtctataagagtnnnnnnnnaccctctccatcacccccgcctccatatgtctacaagtctcctcct 205  Q
    ||||||||||||||||||||||||||||||||||||||        ||||||||||||||| || |||||||||||||||||||||||||||    
T  24470561 catctccttcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcct 24470652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 14 - 205
Target Start/End: Complemental strand, 24421454 - 24421263
Alignment:
Q  14 ccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctc 113  Q
    |||||||| |||||||| || || || ||||| |||||||| ||||||||||| || || || |||||||||||||| ||||||||||||||||||||||    
T  24421454 ccaccatctccctcaccacctcctccgtatgtgtacaagtccccaccacctccatctccctctcctcctcctccatatgtctacaagtcaccacctcctc 24421355  T
Q  114 catctccttcacctcccccaccatatgtctataagagtnnnnnnnnaccctctccatcacccccgcctccatatgtctacaagtctcctcct 205  Q
    ||||||||||||||||||||||||||||||||||||||        ||||||||||||||| || |||||||||||||||||||||||||||    
T  24421354 catctccttcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcct 24421263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 24470269 - 24470460
Alignment:
Q  14 ccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctc 113  Q
    |||||||| |||||||| || || || ||||| |||||||| ||||||||||| || || || |||||||||||||| ||||||||||||||||||||||    
T  24470269 ccaccatctccctcaccacctcctccgtatgtgtacaagtccccaccacctccatctccctctcctcctcctccatatgtctacaagtcaccacctcctc 24470368  T
Q  114 catctccttcacctcccccaccatatgtctataagagtnnnnnnnnaccctctccatcacccccgcctccatatgtctacaagtctcctcct 205  Q
    |||| |||||||||||||||||||||||||||||||||        ||||||||||||||| || |||||||||||||||||||||||||||    
T  24470369 catcaccttcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcct 24470460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 29 - 205
Target Start/End: Complemental strand, 24477576 - 24477400
Alignment:
Q  29 cctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctccatctccttcacctc 128  Q
    ||||||||||| ||||| || |||   |||||||| || || || |||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  24477576 cctcccccaccatatgtctataagagtccaccaccaccatctccctcacctccacctccatatgtctacaagtcaccacctcctccatctccttcacctc 24477477  T
Q  129 ccccaccatatgtctataagagtnnnnnnnnaccctctccatcacccccgcctccatatgtctacaagtctcctcct 205  Q
    |||||||||||||||| ||||||        ||| ||||||||||| || |||||||||||||||||||||||||||    
T  24477476 ccccaccatatgtctacaagagtcctcctctaccttctccatcaccaccacctccatatgtctacaagtctcctcct 24477400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 14 - 117
Target Start/End: Complemental strand, 24421262 - 24421159
Alignment:
Q  14 ccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctc 113  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || |    
T  24421262 ccaccatcaccctcacctcccccaccttatgtttacaagtcaccaccacctccatccccttcacctcctcctccatatgtctacaagtcaccaccaccac 24421163  T
Q  114 catc 117  Q
    ||||    
T  24421162 catc 24421159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 144
Target Start/End: Original strand, 24470653 - 24470783
Alignment:
Q  14 ccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctc 113  Q
    ||||||||||| || ||||||||||||||| |||| ||||| ||||||||||| || |||||||||||||||||||| |||||||||||||||||||| |    
T  24470653 ccaccatcaccttctcctcccccaccctatatttataagtcgccaccacctccatctccttcacctcctcctccatatgtctacaagtcaccacctccac 24470752  T
Q  114 catctccttcacctcccccaccatatgtcta 144  Q
    |||| || || || || ||||||||||||||    
T  24470753 catccccatctccaccaccaccatatgtcta 24470783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 12 - 198
Target Start/End: Complemental strand, 24477689 - 24477503
Alignment:
Q  12 caccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcc 111  Q
    |||||||||| |||||||| || || || ||||| |||||||| ||||||||||| || |  || ||||| |||||| | |||||||| |||||||||||    
T  24477689 caccaccatctccctcaccacctcctccatatgtgtacaagtccccaccacctccatctctctctcctccgcctccacatgtctacaaatcaccacctcc 24477590  T
Q  112 tccatctccttcacctcccccaccatatgtctataagagtnnnnnnnnaccctctccatcacccccgcctccatatgtctacaagtc 198  Q
    ||| |||||||  |||||||||||||||||||||||||||        ||| ||||| ||||| || ||||||||||||||||||||    
T  24477589 tccgtctcctttccctcccccaccatatgtctataagagtccaccaccaccatctccctcacctccacctccatatgtctacaagtc 24477503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 14 - 148
Target Start/End: Complemental strand, 24420926 - 24420792
Alignment:
Q  14 ccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctc 113  Q
    ||||||||||| ||||| || ||||| ||||| || |||||||||||||||||||||||||| |||||||||||||| || |||||||| ||||| || |    
T  24420926 ccaccatcaccttcaccccctccaccatatgtatataagtcaccaccacctccttccccttcccctcctcctccatatgtttacaagtccccacccccac 24420827  T
Q  114 catctccttcacctcccccaccatatgtctataag 148  Q
    |||| ||||| ||||| ||||| ||| | ||||||    
T  24420826 catcaccttctcctcctccaccctatatttataag 24420792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 14 - 146
Target Start/End: Original strand, 24471084 - 24471216
Alignment:
Q  14 ccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctc 113  Q
    |||||||| || |||||||| |||||||||||  | |||||||| |||||||||||  ||||||| ||||||||||||  |||||| || |||||||| |    
T  24471084 ccaccatctccttcacctcctccaccctatgtccataagtcacctccacctccttcagcttcaccacctcctccatactactacaaatctccacctccac 24471183  T
Q  114 catctccttcacctcccccaccatatgtctata 146  Q
    | ||||| |||||||| ||||||||||||||||    
T  24471184 cttctccatcacctcctccaccatatgtctata 24471216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 14 - 148
Target Start/End: Complemental strand, 24420542 - 24420408
Alignment:
Q  14 ccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctc 113  Q
    |||||||| || ||||| || ||||||||||| || |||||||| |||||||||||  ||||||| ||||||||||||  |||||| || |||||||| |    
T  24420542 ccaccatctccttcaccccctccaccctatgtctataagtcacctccacctccttcagcttcaccacctcctccatactactacaaatctccacctccac 24420443  T
Q  114 catctccttcacctcccccaccatatgtctataag 148  Q
    | ||||| |||||||| |||||||||| |||||||    
T  24420442 cttctccatcacctcctccaccatatggctataag 24420408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 24421070 - 24420940
Alignment:
Q  14 ccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctc 113  Q
    |||||||||||||| ||||||||||| ||||| || || ||||||||||| || || || || || ||||| ||||| |||||||||||||||||||| |    
T  24421070 ccaccatcaccctcccctcccccaccatatgtatataaatcaccaccacccccatctccatccccccctccaccatatgtctacaagtcaccacctccac 24420971  T
Q  114 catctccttcacctcccccaccatatgtcta 144  Q
    |||| || || || || || |||||||||||    
T  24420970 catccccatctccaccacctccatatgtcta 24420940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 47 - 141
Target Start/End: Original strand, 24470973 - 24471067
Alignment:
Q  47 tacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctccatctccttcacctcccccaccatatgt 141  Q
    ||||||||||||||||| || ||||||||||| || |||||||||||||| ||||| || |||||||| ||||||||||| || || ||||||||    
T  24470973 tacaagtcaccaccaccaccatccccttcaccaccccctccatacgtctataagtcccctcctcctccttctccttcaccccctcctccatatgt 24471067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 141
Target Start/End: Complemental strand, 24420686 - 24420559
Alignment:
Q  14 ccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctc 113  Q
    |||||||| || ||||| || || || ||| | ||||||||||||||||| || ||||||||||| || |||||||| ||||| ||||| || |||||||    
T  24420686 ccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccacctccatatgtctataagtcccctcctcctc 24420587  T
Q  114 catctccttcacctcccccaccatatgt 141  Q
    | ||||||||||| || || ||||||||    
T  24420586 cttctccttcaccccctcctccatatgt 24420559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 148
Target Start/End: Complemental strand, 24420640 - 24420504
Alignment:
Q  12 caccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcc 111  Q
    |||||||||| || ||||| || || || ||||| || ||||| || || |||||||| |||||||| ||||||||||| || ||||| || || || ||    
T  24420640 caccaccatccccttcaccaccacctccatatgtctataagtcccctcctcctccttctccttcaccccctcctccatatgtttacaaatctcctccccc 24420541  T
Q  112 tccatctccttcacctcccccaccatatgtctataag 148  Q
     |||||||||||||| || ||||| ||||||||||||    
T  24420540 accatctccttcaccccctccaccctatgtctataag 24420504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 24420784 - 24420652
Alignment:
Q  12 caccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcc 111  Q
    |||| ||||| ||||| ||||||||||| |||||||||||||||||||| || || || || || || || ||||||||||| || || || || |||||    
T  24420784 cacctccatctccctctcctcccccaccatatgtttacaagtcaccacctccaccgtctccatccccaccacctccatacgtttataaatctcctcctcc 24420685  T
Q  112 tccatctccttcacctcccccaccatatgtcta 144  Q
     |||||||||||||| || || |||||| ||||    
T  24420684 accatctccttcaccaccgcctccatatatcta 24420652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 148
Target Start/End: Original strand, 24470986 - 24471122
Alignment:
Q  12 caccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcc 111  Q
    |||||||||| || ||||| ||||| || || || || ||||| || || |||||||| |||||||| ||||||||||| || ||||| || || || ||    
T  24470986 caccaccatccccttcaccaccccctccatacgtctataagtcccctcctcctccttctccttcaccccctcctccatatgtttacaaatctcctccccc 24471085  T
Q  112 tccatctccttcacctcccccaccatatgtctataag 148  Q
     ||||||||||||||||| ||||| |||||| |||||    
T  24471086 accatctccttcacctcctccaccctatgtccataag 24471122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 24477545 - 24477457
Alignment:
Q  12 caccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaag 100  Q
    |||||||||| ||||||||||| || || ||||| |||||||||||||| ||||| || ||||||||||| || ||||| |||||||||    
T  24477545 caccaccatctccctcacctccacctccatatgtctacaagtcaccacctcctccatctccttcacctcccccaccatatgtctacaag 24477457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 24420830 - 24420724
Alignment:
Q  14 ccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctc 113  Q
    ||||||||||| || ||||| ||||||||| |||| ||||| ||||||||||| || || || ||||| || ||||| || ||||||||||||||||| |    
T  24420830 ccaccatcaccttctcctcctccaccctatatttataagtcgccaccacctccatctccctctcctcccccaccatatgtttacaagtcaccacctccac 24420731  T
Q  114 catctcc 120  Q
    | |||||    
T  24420730 cgtctcc 24420724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 148
Target Start/End: Complemental strand, 24406581 - 24406441
Alignment:
Q  14 ccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaag------tcaccac 107  Q
    |||||||| || |||||||| ||||| ||||| |  |||||||||||||||||||| |||||||| || ||||| ||  ||||||||       | ||||    
T  24406581 ccaccatctccttcacctcctccaccttatgtctttaagtcaccaccacctccttcgccttcaccgccacctccttatatctacaagactccacctccac 24406482  T
Q  108 ctcctccatctccttcacctcccccaccatatgtctataag 148  Q
    |||| ||||||||||||||||| ||||| ||||||| ||||    
T  24406481 ctccaccatctccttcacctcctccaccttatgtctttaag 24406441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 148
Target Start/End: Complemental strand, 24421001 - 24420888
Alignment:
Q  35 ccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctccatctccttcacctcccccac 134  Q
    ||||| ||||| |||||||||||||| || || ||||| || || || |||||||| |||||||| || ||||| || ||||| |||||||| || ||||    
T  24421001 ccaccatatgtctacaagtcaccacctccaccatccccatctccaccacctccatatgtctacaaatctccacccccaccatcaccttcaccccctccac 24420902  T
Q  135 catatgtctataag 148  Q
    ||||||| ||||||    
T  24420901 catatgtatataag 24420888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 71 - 148
Target Start/End: Original strand, 24470949 - 24471026
Alignment:
Q  71 ccttcacctcctcctccatacgtctacaagtcaccacctcctccatctccttcacctcccccaccatatgtctataag 148  Q
    |||||||| |||||||||||  |||||||||||||||| || ||||| |||||||| ||||| ||||| |||||||||    
T  24470949 ccttcaccacctcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatacgtctataag 24471026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 24421355 - 24421231
Alignment:
Q  17 ccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctccat 116  Q
    ||||| || |||||||||||||| ||||| || |||   |||||||| || || || ||||| || |||||||| ||||||||||| || ||||| ||||    
T  24421355 ccatctccttcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcctccaccat 24421256  T
Q  117 ctccttcacctcccccaccatatgt 141  Q
    | || |||||||||||||| |||||    
T  24421255 caccctcacctcccccaccttatgt 24421231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 148
Target Start/End: Original strand, 24470699 - 24470835
Alignment:
Q  12 caccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcc 111  Q
    |||| ||||| || |||||||| || || ||||| |||||||||||||| || || ||||| || || || || ||||| |||||||| || ||||| ||    
T  24470699 cacctccatctccttcacctcctcctccatatgtctacaagtcaccacctccaccatccccatctccaccaccaccatatgtctacaaatctccaccccc 24470798  T
Q  112 tccatctccttcacctcccccaccatatgtctataag 148  Q
     ||||| |||||||| || ||||||||||| ||||||    
T  24470799 accatcaccttcaccccctccaccatatgtatataag 24470835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 24477350 - 24477238
Alignment:
Q  36 caccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctccatctccttcacctcccccacc 135  Q
    |||||| ||||||||| |||||||||||||| |||||||| |||||| | || || ||||||||||| ||||| || || || |  ||||| || |||||    
T  24477350 caccctctgtttacaaatcaccaccacctccatccccttcccctccttcaccttatgtctacaagtccccaccaccaccgtcacactcaccccctccacc 24477251  T
Q  136 atatgtctataag 148  Q
    |||||| ||||||    
T  24477250 atatgtatataag 24477238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 26 - 129
Target Start/End: Complemental strand, 24420434 - 24420331
Alignment:
Q  26 tcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctccatctccttcac 125  Q
    |||||||| ||||| ||||  || |||||||| ||||||||||| |||||||| || ||||| ||  | |||||||| |||||||| |||||||| ||||    
T  24420434 tcacctcctccaccatatggctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcac 24420335  T
Q  126 ctcc 129  Q
    ||||    
T  24420334 ctcc 24420331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 12 - 147
Target Start/End: Complemental strand, 24421168 - 24421033
Alignment:
Q  12 caccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcc 111  Q
    |||||||||| || || || || || || ||| |||||||||| |||||||| || ||||| ||||| ||||| |||||  | |||||||| || |||||    
T  24421168 caccaccatccccatctccaccacctccatatatttacaagtccccaccaccaccatccccatcaccccctccaccatatatatacaagtctcctcctcc 24421069  T
Q  112 tccatctccttcacctcccccaccatatgtctataa 147  Q
     ||||| || || ||||||||||||||||| |||||    
T  24421068 accatcaccctcccctcccccaccatatgtatataa 24421033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 17 - 148
Target Start/End: Original strand, 24470560 - 24470691
Alignment:
Q  17 ccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctccat 116  Q
    ||||| || |||||||||||||| ||||| || |||   |||||||| || || || ||||| || |||||||| ||||||||||| || ||||| ||||    
T  24470560 ccatctccttcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcctccaccat 24470659  T
Q  117 ctccttcacctcccccaccatatgtctataag 148  Q
    | ||||| ||||||||||| ||| | ||||||    
T  24470660 caccttctcctcccccaccctatatttataag 24470691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 14 - 141
Target Start/End: Original strand, 24470749 - 24470875
Alignment:
Q  14 ccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctc 113  Q
    |||||||| || || || || ||||| ||||| ||||| || ||||| || || || |||||||| ||||| ||||| || || ||||||||||||||||    
T  24470749 ccaccatccccatctccaccaccaccatatgtctacaaatctccacccccaccatcaccttcaccccctccaccatatgtatataagtcaccacctcctc 24470848  T
Q  114 catctccttcacctcccccaccatatgt 141  Q
    ||||||| || ||| |||||||||||||    
T  24470849 catctccctctcct-ccccaccatatgt 24470875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 33 - 144
Target Start/End: Original strand, 24470863 - 24470974
Alignment:
Q  33 ccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctccatctccttcacctccccc 132  Q
    ||||||| |||||||||||||||||||| || || || || || || || ||||||||||| || |||||||| |||||  ||||||||||||| || ||    
T  24470863 ccccaccatatgtttacaagtcaccacctccaccgtctccatccccaccacctccatacgtttataagtcacctcctccagcatctccttcaccacctcc 24470962  T
Q  133 accatatgtcta 144  Q
     |||||| ||||    
T  24470963 tccatatatcta 24470974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 24406479 - 24406382
Alignment:
Q  14 ccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcc 111  Q
    |||||||| || |||||||| ||||| ||||| |  |||||||||||||||||||| |||||||| || ||||| ||  |||||||| | ||||||||    
T  24406479 ccaccatctccttcacctcctccaccttatgtctttaagtcaccaccacctccttcgccttcaccgccacctccttatatctacaagactccacctcc 24406382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 148
Target Start/End: Complemental strand, 24420677 - 24420600
Alignment:
Q  71 ccttcacctcctcctccatacgtctacaagtcaccacctcctccatctccttcacctcccccaccatatgtctataag 148  Q
    |||||||| || ||||||||  |||||||||||||||| || ||||| |||||||| || || |||||||||||||||    
T  24420677 ccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccacctccatatgtctataag 24420600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 141
Target Start/End: Complemental strand, 24420851 - 24420751
Alignment:
Q  41 tatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctccatctccttcacctcccccaccatatg 140  Q
    |||||||||||||| ||||| || || || ||||| |||||||| || ||  | || ||||| ||||| ||||||||||| || ||||||||||||||||    
T  24420851 tatgtttacaagtccccacccccaccatcaccttctcctcctccaccctatatttataagtcgccaccacctccatctccctctcctcccccaccatatg 24420752  T
Q  141 t 141  Q
    |    
T  24420751 t 24420751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 24421312 - 24421180
Alignment:
Q  12 caccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcc 111  Q
    ||||||| || || ||||| || || || ||||| |||||||| || || || || || || |||||||| || || || || |||||||||||||| ||    
T  24421312 caccaccctctccatcaccaccacctccatatgtctacaagtctcctcctccaccatcaccctcacctcccccaccttatgtttacaagtcaccaccacc 24421213  T
Q  112 tccatctccttcacctcccccaccatatgtcta 144  Q
    |||||| ||||||||||| || |||||||||||    
T  24421212 tccatccccttcacctcctcctccatatgtcta 24421180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 24421408 - 24421276
Alignment:
Q  12 caccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcc 111  Q
    |||| ||||| ||||| ||||| || || ||||| |||||||||||||| ||||| || ||||||||||| || ||||| ||||| |||   ||||| ||    
T  24421408 cacctccatctccctctcctcctcctccatatgtctacaagtcaccacctcctccatctccttcacctcccccaccatatgtctataagagtccaccacc 24421309  T
Q  112 tccatctccttcacctcccccaccatatgtcta 144  Q
     || ||||| ||||| || || |||||||||||    
T  24421308 accctctccatcaccaccacctccatatgtcta 24421276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 24470315 - 24470447
Alignment:
Q  12 caccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcc 111  Q
    |||| ||||| ||||| ||||| || || ||||| |||||||||||||| ||||| || ||||||||||| || ||||| ||||| |||   ||||| ||    
T  24470315 cacctccatctccctctcctcctcctccatatgtctacaagtcaccacctcctccatcaccttcacctcccccaccatatgtctataagagtccaccacc 24470414  T
Q  112 tccatctccttcacctcccccaccatatgtcta 144  Q
     || ||||| ||||| || || |||||||||||    
T  24470415 accctctccatcaccaccacctccatatgtcta 24470447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 24470368 - 24470492
Alignment:
Q  17 ccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctccat 116  Q
    |||||||| |||||||||||||| ||||| || |||   |||||||| || || || ||||| || |||||||| ||||||||||| || ||||| |||     
T  24470368 ccatcaccttcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcctccaccaa 24470467  T
Q  117 ctccttcacctcccccaccatatgt 141  Q
    | || ||||||||||| || |||||    
T  24470468 caccctcacctcccccgccctatgt 24470492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 141
Target Start/End: Complemental strand, 24477228 - 24477098
Alignment:
Q  14 ccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacct---cctcctccatacgtctacaagtcaccacctc 110  Q
    |||||||||||||| ||||||||||| ||||||||  || |||| ||||| ||  | || || |||   ||||||||||| ||||| ||| |||||||||    
T  24477228 ccaccatcaccctctcctcccccaccgtatgtttatgagccaccgccaccgccacctccatcccctacccctcctccatatgtctataaggcaccacctc 24477129  T
Q  111 ctccatctccttcacctcccccaccatatgt 141  Q
    |||||||||| || || || || ||||||||    
T  24477128 ctccatctccatccccaccacctccatatgt 24477098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 24421216 - 24421089
Alignment:
Q  12 caccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcc 111  Q
    |||| ||||| || |||||||| || || ||||| ||||||||||||||||| || ||||| || || || ||||||||  | |||||||| ||||| ||    
T  24421216 cacctccatccccttcacctcctcctccatatgtctacaagtcaccaccaccaccatccccatctccaccacctccatatatttacaagtccccaccacc 24421117  T
Q  112 tccatctccttcacctcccccaccatat 139  Q
     ||||| || ||||| || |||||||||    
T  24421116 accatccccatcaccccctccaccatat 24421089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 141
Target Start/End: Complemental strand, 24477054 - 24477011
Alignment:
Q  98 aagtcaccacctcctccatctccttcacctcccccaccatatgt 141  Q
    ||||||||||||||||||||||| || |||||||||||||||||    
T  24477054 aagtcaccacctcctccatctccctctcctcccccaccatatgt 24477011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 24406626 - 24406517
Alignment:
Q  17 ccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctccat 116  Q
    ||||||||  |||| || ||||| ||||||||||| || ||||| || || || |||||||||||||| || || ||||  ||||||||||| ||||| |    
T  24406626 ccatcaccaccaccaccaccaccgtatgtttacaaatctccacccccaccatctccttcacctcctccaccttatgtctttaagtcaccaccacctcctt 24406527  T
Q  117 ctccttcacc 126  Q
    | ||||||||    
T  24406526 cgccttcacc 24406517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 148
Target Start/End: Complemental strand, 24476883 - 24476806
Alignment:
Q  71 ccttcacctcctcctccatacgtctacaagtcaccacctcctccatctccttcacctcccccaccatatgtctataag 148  Q
    |||||||| ||||||||||| || ||  | || ||||| || ||||||||||||||||||||| | ||||||||||||    
T  24476883 ccttcaccccctcctccatatgtttatgaatctccacccccaccatctccttcacctcccccatcctatgtctataag 24476806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 126
Target Start/End: Complemental strand, 24477054 - 24476978
Alignment:
Q  50 aagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctccatctccttcacc 126  Q
    ||||||||||| ||||| || || || ||||| || ||||| || ||||||||||||||||| |||||| |||||||    
T  24477054 aagtcaccacctcctccatctccctctcctcccccaccatatgtatacaagtcaccacctccaccatctacttcacc 24476978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 80 - 115
Target Start/End: Complemental strand, 24481958 - 24481923
Alignment:
Q  80 cctcctccatacgtctacaagtcaccacctcctcca 115  Q
    |||||||||||||| |||||||||||||||||||||    
T  24481958 cctcctccatacgtgtacaagtcaccacctcctcca 24481923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 80 - 115
Target Start/End: Complemental strand, 24482090 - 24482055
Alignment:
Q  80 cctcctccatacgtctacaagtcaccacctcctcca 115  Q
    |||||||||||||| |||||||||||||||||||||    
T  24482090 cctcctccatacgtgtacaagtcaccacctcctcca 24482055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 144
Target Start/End: Complemental strand, 24477723 - 24477605
Alignment:
Q  26 tcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctccatctccttcac 125  Q
    ||||| || ||||| ||||| || ||||| || ||||| || || || ||||| ||||||||||| || |||||||| ||||| ||||||||||  || |    
T  24477723 tcaccaccaccaccttatgtctataagtctcctccaccaccatctccctcaccacctcctccatatgtgtacaagtccccaccacctccatctctctctc 24477624  T
Q  126 ctcccccaccatatgtcta 144  Q
    |||| || ||| |||||||    
T  24477623 ctccgcctccacatgtcta 24477605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 24481790 - 24481749
Alignment:
Q  74 tcacctcctcctccatacgtctacaagtcaccacctcctcca 115  Q
    ||||| |||||||||||||| ||||| |||||||||||||||    
T  24481790 tcaccacctcctccatacgtatacaaatcaccacctcctcca 24481749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 141
Target Start/End: Complemental strand, 24420947 - 24420847
Alignment:
Q  41 tatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctccatctccttcacctcccccaccatatg 140  Q
    ||||| ||||| || ||||| || || || |||||||| ||||| ||||| || || ||||||||||| ||||| || ||||| ||||| || |||||||    
T  24420947 tatgtctacaaatctccacccccaccatcaccttcaccccctccaccatatgtatataagtcaccaccacctccttccccttcccctcctcctccatatg 24420848  T
Q  141 t 141  Q
    |    
T  24420847 t 24420847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 24482197 - 24482157
Alignment:
Q  75 cacctcctcctccatacgtctacaagtcaccacctcctcca 115  Q
    |||| ||||||||||| || |||||||||||||||||||||    
T  24482197 caccacctcctccatatgtgtacaagtcaccacctcctcca 24482157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 84; Significance: 4e-40; HSPs: 8)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 14 - 117
Target Start/End: Original strand, 4512 - 4615
Alignment:
Q  14 ccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctc 113  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || |    
T  4512 ccaccatcaccctcacctcccccaccatatgtttacaagtcaccaccacctccatccccttcacctcctcctccatatgtctacaagtcaccaccaccac 4611  T
Q  114 catc 117  Q
    ||||    
T  4612 catc 4615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 119 - 205
Target Start/End: Original strand, 4425 - 4511
Alignment:
Q  119 ccttcacctcccccaccatatgtctataagagtnnnnnnnnaccctctccatcacccccgcctccatatgtctacaagtctcctcct 205  Q
    |||||||||||||||||||||||||||||||||        ||||||||||||||| || |||||||||||||||||||||||||||    
T  4425 ccttcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcct 4511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 144
Target Start/End: Original strand, 4704 - 4834
Alignment:
Q  14 ccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctc 113  Q
    |||||||||||||| ||||||||||| ||||| || || ||||||||||| || || || || || ||||| ||||| |||||||||||||||||||| |    
T  4704 ccaccatcaccctcccctcccccaccatatgtatataaatcaccaccacccccatctccatccccccctccaccatatgtctacaagtcaccacctccac 4803  T
Q  114 catctccttcacctcccccaccatatgtcta 144  Q
    |||| || || || || || |||||||||||    
T  4804 catccccatctccaccacctccatatgtcta 4834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 141
Target Start/End: Original strand, 4428 - 4543
Alignment:
Q  26 tcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctccatctccttcac 125  Q
    |||||||||||||| ||||| || |||   |||||||| || || || ||||| || |||||||| ||||||||||| || ||||| ||||| || ||||    
T  4428 tcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcctccaccatcaccctcac 4527  T
Q  126 ctcccccaccatatgt 141  Q
    ||||||||||||||||    
T  4528 ctcccccaccatatgt 4543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 4462 - 4594
Alignment:
Q  12 caccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcc 111  Q
    ||||||| || || ||||| || || || ||||| |||||||| || || || || || || |||||||| || ||||| || |||||||||||||| ||    
T  4462 caccaccctctccatcaccaccacctccatatgtctacaagtctcctcctccaccatcaccctcacctcccccaccatatgtttacaagtcaccaccacc 4561  T
Q  112 tccatctccttcacctcccccaccatatgtcta 144  Q
    |||||| ||||||||||| || |||||||||||    
T  4562 tccatccccttcacctcctcctccatatgtcta 4594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 12 - 147
Target Start/End: Original strand, 4606 - 4741
Alignment:
Q  12 caccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcc 111  Q
    |||||||||| || || || || || || ||| |||||||||| |||||||| || ||||| ||||| ||||| |||||  | |||||||| || |||||    
T  4606 caccaccatccccatctccaccacctccatatatttacaagtccccaccaccaccatccccatcaccccctccaccatatatatacaagtctcctcctcc 4705  T
Q  112 tccatctccttcacctcccccaccatatgtctataa 147  Q
     ||||| || || ||||||||||||||||| |||||    
T  4706 accatcaccctcccctcccccaccatatgtatataa 4741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 4558 - 4685
Alignment:
Q  12 caccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcc 111  Q
    |||| ||||| || |||||||| || || ||||| ||||||||||||||||| || ||||| || || || ||||||||  | |||||||| ||||| ||    
T  4558 cacctccatccccttcacctcctcctccatatgtctacaagtcaccaccaccaccatccccatctccaccacctccatatatttacaagtccccaccacc 4657  T
Q  112 tccatctccttcacctcccccaccatat 139  Q
     ||||| || ||||| || |||||||||    
T  4658 accatccccatcaccccctccaccatat 4685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 126
Target Start/End: Original strand, 4773 - 4864
Alignment:
Q  35 ccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctccatctccttcacc 126  Q
    ||||| ||||| |||||||||||||| || || ||||| || || || |||||||| |||||||| || ||||| || ||||| ||||||||    
T  4773 ccaccatatgtctacaagtcaccacctccaccatccccatctccaccacctccatatgtctacaaatctccacccccaccatcaccttcacc 4864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 41900433 - 41900301
Alignment:
Q  12 caccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcc 111  Q
    |||||||||| || ||||| || ||||| ||| ||||||||||||||||||||||||| ||||||| |||||| ||||| |||||||| || || || ||    
T  41900433 caccaccatccccatcaccacctccaccttatatttacaagtcaccaccacctccttctccttcacttcctccaccatatgtctacaaatctcctccacc 41900334  T
Q  112 tccatctccttcacctcccccaccatatgtcta 144  Q
    ||| ||||||||||| || || |||||||||||    
T  41900333 tccctctccttcaccaccacctccatatgtcta 41900301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 47 - 205
Target Start/End: Complemental strand, 41900446 - 41900288
Alignment:
Q  47 tacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctccatctccttcacctcccccaccatatgtctata 146  Q
    |||||||| |||||||| || ||||| ||||| ||||| || ||  | |||||||||||||| ||||| |||||||||| ||| |||||||||||||| |    
T  41900446 tacaagtccccaccaccaccatccccatcaccacctccaccttatatttacaagtcaccaccacctccttctccttcacttcctccaccatatgtctaca 41900347  T
Q  147 agagtnnnnnnnnaccctctccatcacccccgcctccatatgtctacaagtctcctcct 205  Q
    |   |         |||||||| ||||| || |||||||||||||||||||||||||||    
T  41900346 aatctcctccacctccctctccttcaccaccacctccatatgtctacaagtctcctcct 41900288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 12 - 126
Target Start/End: Complemental strand, 41900625 - 41900511
Alignment:
Q  12 caccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcc 111  Q
    |||||||||| || ||||| || ||||| ||| |||| ||||||||||||||||| || |||||||||||||| ||||| |||||||| || || || ||    
T  41900625 caccaccatctccttcaccacctccaccttatatttataagtcaccaccacctccctctccttcacctcctccgccatatgtctacaaatctcctccacc 41900526  T
Q  112 tccatctccttcacc 126  Q
    ||| ||||| |||||    
T  41900525 tccctctccatcacc 41900511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 141
Target Start/End: Complemental strand, 41900001 - 41899872
Alignment:
Q  12 caccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcc 111  Q
    ||||||| || |||||||| || || || |||||||||||||| |||||||| |||||||| ||||| ||||||||||| |  |||||||| || || ||    
T  41900001 caccaccttccccctcaccacctcctccatatgtttacaagtccccaccaccgccttccccgtcaccccctcctccatatgcgtacaagtctcctccccc 41899902  T
Q  112 tccatctccttcacctcccccaccatatgt 141  Q
     ||||| |||||||| || || ||||||||    
T  41899901 accatcaccttcaccgcctcctccatatgt 41899872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 41900035 - 41899953
Alignment:
Q  26 tcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacc 108  Q
    |||||||| ||||| ||||| |||||||| |||||||| |||||||| ||||| ||||||||||| || |||||||| |||||    
T  41900035 tcacctccaccaccatatgtctacaagtccccaccaccaccttccccctcaccacctcctccatatgtttacaagtccccacc 41899953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 141
Target Start/End: Complemental strand, 41900241 - 41900112
Alignment:
Q  12 caccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcc 111  Q
    |||||||||| || ||||| || || || |||||  ||||||||||||||| |||||| || ||||||||||| || || |||||||| || || || ||    
T  41900241 caccaccatccccatcaccacctccgccttatgtgcacaagtcaccaccacatccttctccctcacctcctccaccgtatgtctacaaatctcctccacc 41900142  T
Q  112 tccatctccttcacctcccccaccatatgt 141  Q
    ||| ||||||||||| || || ||||||||    
T  41900141 tccctctccttcaccaccgcctccatatgt 41900112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 41899894 - 41899826
Alignment:
Q  71 ccttcacctcctcctccatacgtctacaagtcaccacctcctccatctccttcacctcccccaccatat 139  Q
    |||||||| ||||||||||| || |||||||| |||||||| || ||| |||||||||| |||||||||    
T  41899894 ccttcaccgcctcctccatatgtttacaagtctccacctccaccttcttcttcacctcctccaccatat 41899826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 41900065 - 41900013
Alignment:
Q  92 gtctacaagtcaccacctcctccatctccttcacctcccccaccatatgtcta 144  Q
    |||||||| || ||||||||||| |||||||||||||| ||||||||||||||    
T  41900065 gtctacaactctccacctcctccctctccttcacctccaccaccatatgtcta 41900013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 41900254 - 41900157
Alignment:
Q  47 tacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctccatctccttcacctcccccaccatatgtcta 144  Q
    |||||||| |||||||| || ||||| ||||| ||||| || || ||  ||||||||||||| | ||| ||||| |||||||| ||||| ||||||||    
T  41900254 tacaagtccccaccaccaccatccccatcaccacctccgccttatgtgcacaagtcaccaccacatccttctccctcacctcctccaccgtatgtcta 41900157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 41900638 - 41900541
Alignment:
Q  47 tacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctccatctccttcacctcccccaccatatgtcta 144  Q
    ||||| || |||||||| || || |||||||| ||||| || ||  | || ||||||||||| ||||| |||||||||||||| || |||||||||||    
T  41900638 tacaaatctccaccaccaccatctccttcaccacctccaccttatatttataagtcaccaccacctccctctccttcacctcctccgccatatgtcta 41900541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 41899903 - 41899827
Alignment:
Q  14 ccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccata 90  Q
    ||||||||||| ||||| || || || |||||||||||||| ||||| || |||||  ||||||||||||| |||||    
T  41899903 ccaccatcaccttcaccgcctcctccatatgtttacaagtctccacctccaccttcttcttcacctcctccaccata 41899827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 41900371 - 41900279
Alignment:
Q  26 tcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctccatct 118  Q
    |||| ||| ||||| ||||| ||||| || || |||||||| || |||||||| || |||||||| ||||||||||| || ||||| ||||||    
T  41900371 tcacttcctccaccatatgtctacaaatctcctccacctccctctccttcaccaccacctccatatgtctacaagtctcctcctccaccatct 41900279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 141
Target Start/End: Complemental strand, 41900068 - 41899968
Alignment:
Q  41 tatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctccatctccttcacctcccccaccatatg 140  Q
    ||||| ||||| || ||||| ||||| || ||||||||||| || ||||| ||||||||||| ||||| || || || || ||||| || || |||||||    
T  41900068 tatgtctacaactctccacctcctccctctccttcacctccaccaccatatgtctacaagtccccaccaccaccttccccctcaccacctcctccatatg 41899969  T
Q  141 t 141  Q
    |    
T  41899968 t 41899968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 41900182 - 41900106
Alignment:
Q  23 ccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaa 99  Q
    ||||||||||| ||||| ||||| ||||| || || |||||||| || |||||||| || |||||||| || |||||    
T  41900182 ccctcacctcctccaccgtatgtctacaaatctcctccacctccctctccttcaccaccgcctccatatgtttacaa 41900106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 12 - 138
Target Start/End: Original strand, 11902099 - 11902225
Alignment:
Q  12 caccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcc 111  Q
    |||||||||| || |||||  | || || ||||| |||||||||||||||||||| ||||| ||||| || ||||| ||||| |||||||||||||| ||    
T  11902099 caccaccatctccttcaccgtcacctccttatgtgtacaagtcaccaccacctccatccccatcacccccacctccttacgtgtacaagtcaccaccacc 11902198  T
Q  112 tccatctccttcacctcccccaccata 138  Q
     || || ||||| || |||||||||||    
T  11902199 accctcgccttccccgcccccaccata 11902225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 126
Target Start/End: Original strand, 11879442 - 11879521
Alignment:
Q  47 tacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctccatctccttcacc 126  Q
    ||||||||||||||||| ||  | |||||||| || ||||| || || |||||||||||||| || ||||||||||||||    
T  11879442 tacaagtcaccaccaccaccaactccttcaccaccacctccttatgtgtacaagtcaccaccaccgccatctccttcacc 11879521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 12 - 138
Target Start/End: Original strand, 11879455 - 11879581
Alignment:
Q  12 caccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcc 111  Q
    |||||||| | || ||||| || || || ||||| ||||||||||||||||| || || |||||||| || ||||| || || |||||||||||||| ||    
T  11879455 caccaccaactccttcaccaccacctccttatgtgtacaagtcaccaccaccgccatctccttcaccaccacctccttatgtgtacaagtcaccaccacc 11879554  T
Q  112 tccatctccttcacctcccccaccata 138  Q
     || || ||||| || || ||||||||    
T  11879555 accctcaccttccccaccaccaccata 11879581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 11902080 - 11902165
Alignment:
Q  41 tatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctccatctccttcacc 126  Q
    ||||| ||||||||||||||||| || || ||||||||  | ||||| || || |||||||||||||| |||||||| || |||||    
T  11902080 tatgtatacaagtcaccaccaccaccatctccttcaccgtcacctccttatgtgtacaagtcaccaccacctccatccccatcacc 11902165  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 140
Target Start/End: Original strand, 11901903 - 11902014
Alignment:
Q  29 cctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctccatctccttcacctc 128  Q
    ||||| ||||| ||||  |||||||| |||||||| || || || ||||| |||||||| || || || |||||||||||||| |||||  | ||||| |    
T  11901903 cctccaccaccttatgagtacaagtccccaccaccgccgtctccctcaccacctcctccttatgtgtataagtcaccacctcccccatcctcgtcacccc 11902002  T
Q  129 ccccaccatatg 140  Q
    | ||||||||||    
T  11902003 caccaccatatg 11902014  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 126
Target Start/End: Original strand, 11902038 - 11902117
Alignment:
Q  47 tacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctccatctccttcacc 126  Q
    ||||||||||||||||| ||  |  ||||||| || ||||| || || |||||||||||||| || ||||||||||||||    
T  11902038 tacaagtcaccaccaccaccaacttcttcaccaccacctccttatgtatacaagtcaccaccaccaccatctccttcacc 11902117  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 148
Target Start/End: Original strand, 11904968 - 11905102
Alignment:
Q  14 ccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctc 113  Q
    ||||||||||| || || || ||||| ||   ||||||||||||||| || || || || || |||||||| ||||||   || |||||||||||||| |    
T  11904968 ccaccatcaccatctccaccaccaccatactattacaagtcaccacctccaccatctccatctcctcctccaccatactattataagtcaccacctccac 11905067  T
Q  114 catctccttcacctcccccaccatatgtctataag 148  Q
    |||| || || ||||| |||||||||  |||||||    
T  11905068 catccccatcccctcctccaccatattactataag 11905102  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 11881938 - 11881995
Alignment:
Q  81 ctcctccatacgtctacaagtcaccacctcctccatctccttcacctcccccaccata 138  Q
    |||| ||||||  ||||||||||||||| || |||||||| |||||||| ||||||||    
T  11881938 ctccaccatactactacaagtcaccacccccaccatctccatcacctcctccaccata 11881995  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 11882171 - 11882268
Alignment:
Q  14 ccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcc 111  Q
    ||||||||||| || || || ||||| |||  ||| ||||||||||| || || ||||| || |||||||| ||||||  ||||||||| ||||||||    
T  11882171 ccaccatcaccatctcccccaccaccttattattataagtcaccacccccaccatccccgtcccctcctccaccatactactacaagtctccacctcc 11882268  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 11891172 - 11891229
Alignment:
Q  81 ctcctccatacgtctacaagtcaccacctcctccatctccttcacctcccccaccata 138  Q
    |||| ||||||  ||||||||||||||| || |||||||| |||||||| ||||||||    
T  11891172 ctccaccatactactacaagtcaccacccccaccatctccatcacctcctccaccata 11891229  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 11891405 - 11891502
Alignment:
Q  14 ccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcc 111  Q
    ||||||||||| || || || ||||| |||  ||| ||||||||||| || || ||||| || |||||||| ||||||  ||||||||| ||||||||    
T  11891405 ccaccatcaccatctcccccaccaccttattattataagtcaccacccccaccatccccgtcccctcctccaccatactactacaagtctccacctcc 11891502  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 52821473 - 52821356
Alignment:
Q  12 caccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcc 111  Q
    ||||||| || ||||||||||| ||||| ||    |||||||| |||||||| || || || |||||||| ||||| |||  |||||||||||| || ||    
T  52821473 caccaccctctccctcacctccaccaccttactactacaagtccccaccaccaccctctccctcacctccacctccttactactacaagtcacctccacc 52821374  T
Q  112 tccatctccttcacctcc 129  Q
     || ||||| ||||||||    
T  52821373 accctctccctcacctcc 52821356  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 138
Target Start/End: Complemental strand, 52819032 - 52818944
Alignment:
Q  50 aagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctccatctccttcacctcccccaccata 138  Q
    |||||||||||||| || || || || |||||||| ||||||   || |||||||||||||| ||||| || || |||||||| |||||    
T  52819032 aagtcaccaccaccaccatcaccatcccctcctccaccatactattataagtcaccacctccaccatcaccatcccctccccctccata 52818944  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 135
Target Start/End: Complemental strand, 52821390 - 52821302
Alignment:
Q  47 tacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctccatctccttcacctcccccacc 135  Q
    ||||||||||| ||||| || || || |||||||| ||||| |||  |||||||||||| || || || || ||||||||||| |||||    
T  52821390 tacaagtcacctccaccaccctctccctcacctccacctccttactactacaagtcacctccaccaccttcaccttcacctcctccacc 52821302  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 52821633 - 52821569
Alignment:
Q  47 tacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcc 111  Q
    |||||||| ||||| || |||||||| || ||||| ||||| || || |||||||||||||||||    
T  52821633 tacaagtctccacctccaccttccccatcccctccacctccttatgtatacaagtcaccacctcc 52821569  T

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Target: scaffold1918 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: scaffold1918
Description:

Target: scaffold1918; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 140
Target Start/End: Complemental strand, 518 - 425
Alignment:
Q  47 tacaagtcaccaccacctccttccccttcacctcctcctccatacgtctacaagtcaccacctcctccatctccttcacctcccccaccatatg 140  Q
    ||||||||||| |||||||| || || |||||||| || || ||| | |||||||||||||| |||||||| || |||||||| ||||||||||    
T  518 tacaagtcacccccacctccatcaccatcacctccaccaccttacatttacaagtcaccaccacctccatcaccgtcacctccaccaccatatg 425  T

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Target: scaffold1918; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 505 - 427
Alignment:
Q  12 caccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccata 90  Q
    |||| |||||||| |||||||| ||||| ||  |||||||||||||||||||||| || || |||||||| || |||||    
T  505 cacctccatcaccatcacctccaccaccttacatttacaagtcaccaccacctccatcaccgtcacctccaccaccata 427  T

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Target: scaffold1918; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 388 - 319
Alignment:
Q  12 caccaccatcaccctcacctcccccaccctatgtttacaagtcaccaccacctccttccccttcacctcc 81  Q
    ||||||||||||| ||||| || ||||| ||  |||||||||||||||| ||||| || || ||||||||    
T  388 caccaccatcaccatcaccaccaccaccttacatttacaagtcaccaccgcctccctcaccgtcacctcc 319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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