View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21390_low_5 (Length: 512)
Name: NF21390_low_5
Description: NF21390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21390_low_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 1 - 512
Target Start/End: Original strand, 14249238 - 14249749
Alignment:
| Q |
1 |
aaagctcaccaacagctatgccaaattcctaaccatggccacttcaaaaggaccccaatcccttcaataatgctcaattggaggcaaagaagcatgaaat |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14249238 |
aaagctcaccaacagccatgccaaattcctaaccatggccacttcaaaaggaccccaatcccttcaataatgctcaattggaggcaaagaagcatgaaat |
14249337 |
T |
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| Q |
101 |
tctgaaagtaatcaaactccaataaaattggagcaataattcatcatcagttaacacattttgcttattaacttaagtctatgatatgaatacccaaact |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
14249338 |
tctgaaaataatcaaactccaataaaattggagcaataattcatcatcagttaacacattttgctcattaacttaagtctatgatatgaatacccaaact |
14249437 |
T |
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| Q |
201 |
ttcactctcaatcaggaaagtaaaagtcataaaaattcaaaacccaccaggaaaaagaaacagaagcaacaactcaactcatcactcccggttcgatctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14249438 |
ttcactctcaatcaggaaagtaaaagtcataaaaattcaaaacccaccaggaaaaagaaacagaagcaacaactcaactcatcactcccggttcgatctt |
14249537 |
T |
|
| Q |
301 |
cacattccattctgttccattatgctcgcatttgcataccaatcaagcttcaatcactagttattcatcatccatatgctttccttccttcaatcactaa |
400 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14249538 |
cacattccattctgttccattacgctcgcatttgcataccaatcaagcttcaatcactagttattcatcatccatatgctttccttccttcaatcactaa |
14249637 |
T |
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| Q |
401 |
acaaataattcaccatattctaaaaccctaatcagttttcccacctaggaaaaccctaactctaattgaactcctcaattcaaggacttcatcactcaaa |
500 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14249638 |
acaaataattcaccatcttctaaaaccctaatcagttttcccacctaggaaaaccctaactctaattgaactcctcaattcaaggacttcatcactcaaa |
14249737 |
T |
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| Q |
501 |
aataacaataac |
512 |
Q |
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|||||||||||| |
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| T |
14249738 |
aataacaataac |
14249749 |
T |
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