View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21390_low_7 (Length: 443)
Name: NF21390_low_7
Description: NF21390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21390_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 7381046 - 7381308
Alignment:
| Q |
1 |
atgggaccagaaggacaataccatcttctcttacaagttcttgtctttgtctctctttcaactacccttttgggaattcccatgcaaaaaagcttcttgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7381046 |
atgggaccagaaggacaataccatcttctcttacaagttcttgtctttgtctctctttcaactacccttttgggaattcccatgcaaaaaagcttcttgg |
7381145 |
T |
|
| Q |
101 |
ttagttttgtgagatcattaagtatattttttcaaggcttgtggcttatggttatggggtacatgctttggacaccaagtttgattgccaaagggtgttt |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7381146 |
ttagttttgtaagatcattaagtatattttttcaaggcttgtggcttatggttatggggtacatgctttggacaccaagtttaattgccaaagggtgttt |
7381245 |
T |
|
| Q |
201 |
tatgaattctgaagaaggacataaagttgtgagatgttctgatgaagaatcacttcatcgtgc |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7381246 |
tatgaattctgaagaaggacataaagttgtgagatgttctgatgaagaatcacttcatcgtgc |
7381308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 343 - 434
Target Start/End: Original strand, 7381388 - 7381479
Alignment:
| Q |
343 |
accaaatattatggtgcaaataaagttcggtatttctcgttggggattgaggatgaagagagagaagatgttgaaaagttaagtgatgatgt |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7381388 |
accaaatattatggtgcaaataaagttcggtatttctcgttggggattgaggatgaagagagagaagatgttgaaaagttaagtgatgatgt |
7381479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University