View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21391_high_10 (Length: 374)

Name: NF21391_high_10
Description: NF21391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21391_high_10
NF21391_high_10
[»] chr3 (3 HSPs)
chr3 (21-176)||(18161265-18161420)
chr3 (194-364)||(18160931-18161104)
chr3 (229-289)||(19407206-19407263)
[»] chr1 (1 HSPs)
chr1 (35-149)||(33899020-33899139)
[»] chr6 (3 HSPs)
chr6 (23-80)||(6796471-6796528)
chr6 (25-74)||(7441269-7441318)
chr6 (25-53)||(33823151-33823179)
[»] chr8 (7 HSPs)
chr8 (23-103)||(19403294-19403373)
chr8 (23-149)||(19459358-19459490)
chr8 (23-149)||(19557036-19557168)
chr8 (29-84)||(5831587-5831642)
chr8 (23-66)||(19409224-19409267)
chr8 (23-66)||(19456243-19456286)
chr8 (23-66)||(19524791-19524834)
[»] scaffold0653 (1 HSPs)
scaffold0653 (25-55)||(964-994)
[»] chr7 (2 HSPs)
chr7 (25-55)||(9287323-9287353)
chr7 (25-55)||(9297115-9297145)
[»] chr4 (1 HSPs)
chr4 (25-55)||(35752692-35752722)


Alignment Details
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 21 - 176
Target Start/End: Complemental strand, 18161420 - 18161265
Alignment:
Q  21 aacgagaggtggaggatcacttgttttgtagatgtaacttggttgcggaaatttggtatttgatctttaaatggattggaacggtgtcattctaccatgt 120  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18161420 aacgagaggtggaggatcacttgttttgtcgatgtaacttggtagcggaaatttggtatttgatctttaaatggattggaatggtgtcattctaccatgt 18161321  T
Q  121 ggtctccctcatagattatttctcttcttattctttatcaagaaagcaccctaagg 176  Q
    |||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  18161320 ggtctctctcctagattatttctcttcttattctttatcaaaaaagcaccctaagg 18161265  T

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Target: chr3; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 194 - 364
Target Start/End: Complemental strand, 18161104 - 18160931
Alignment:
Q  194 taatgcaggaatttaagaatcagaaacacaataaaatacactgtcagtggagtcaactctt-ctagctacattatattctgcttaattcattctttc--c 290  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||  |||  | ||||||||||||||||||||||| ||||  |    
T  18161104 taatgcaggaatttaagaatcagaaatgcaataaaatacactgtcagtggagtcaaccctggctacattcattatattctgcttaattcattatttctcc 18161005  T
Q  291 tttcattcagtacataaggtagagaataataagacagcttcctagcaaataacagttgtatgcaatagcctatg 364  Q
    |||||||| |||||||||||||| ||||||||||||||||||| | ||||||||||||||| |||| |||||||    
T  18161004 tttcattctgtacataaggtagaaaataataagacagcttccttgaaaataacagttgtatacaattgcctatg 18160931  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 19407263 - 19407206
Alignment:
Q  229 atacactgtcagtggagtcaactcttctagctacattatattctgcttaattcattctttc 289  Q
    |||||||||| ||||||||||||||    || |||||||||||||||||||||||| ||||    
T  19407263 atacactgtccgtggagtcaactctg---gcaacattatattctgcttaattcattatttc 19407206  T

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Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 35 - 149
Target Start/End: Complemental strand, 33899139 - 33899020
Alignment:
Q  35 gatcacttgttttgtagatgtaacttggttgcggaaatttggtatttgatctttaaatggattggaacggtgtcattctacc-----atgtggtctccct 129  Q
    |||||||||||||| ||||||||||| ||||||||||| || |||| ||| ||||||||||||| ||||| |||||||||||     ||||||| |||||    
T  33899139 gatcacttgttttgcagatgtaactttgttgcggaaatatgatattcgatttttaaatggattgtaacggggtcattctaccctaaaatgtggtttccct 33899040  T
Q  130 catagattatttctcttctt 149  Q
    | ||||| |||| |||||||    
T  33899039 cctagatcatttatcttctt 33899020  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 6796528 - 6796471
Alignment:
Q  23 cgagaggtggaggatcacttgttttgtagatgtaacttggttgcggaaatttggtatt 80  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6796528 cgagagatggaggatcacttgttttgtagatgtaactttgttgcggaaatttggtatt 6796471  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 7441269 - 7441318
Alignment:
Q  25 agaggtggaggatcacttgttttgtagatgtaacttggttgcggaaattt 74  Q
    |||||||||| ||||||||||||||||||||||||| |||  ||||||||    
T  7441269 agaggtggagaatcacttgttttgtagatgtaactttgttatggaaattt 7441318  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 53
Target Start/End: Complemental strand, 33823179 - 33823151
Alignment:
Q  25 agaggtggaggatcacttgttttgtagat 53  Q
    |||||||||||||||||||||||||||||    
T  33823179 agaggtggaggatcacttgttttgtagat 33823151  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 19403294 - 19403373
Alignment:
Q  23 cgagaggtggaggatcacttgttttgtagatgtaacttggttgcggaaatttggtatttgatctttaaatggattggaacg 103  Q
    |||||| |||||||||||||||||||||||| ||||||  |||| || |||||||||| ||| ||||||||||| ||||||    
T  19403294 cgagagctggaggatcacttgttttgtagat-taacttcattgcagacatttggtattcgatttttaaatggatcggaacg 19403373  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 149
Target Start/End: Complemental strand, 19459490 - 19459358
Alignment:
Q  23 cgagaggtggaggatcacttgttttgtagatgtaacttggttgcggaaatttggtatttgatctttaaatggattggaacggtg-tcattctacc----- 116  Q
    |||||||||||||||| ||| |||||||||||||||||   ||| || ||||| ||||  || ||||||||||| ||||||| | ||||||||||         
T  19459490 cgagaggtggaggatcgcttattttgtagatgtaacttcactgcagacatttgatattcaatttttaaatggatcggaacggagatcattctacctagaa 19459391  T
Q  117 atgtggtctccctcatagattatttctcttctt 149  Q
     ||| || |||||| ||||||||||||||||||    
T  19459390 gtgttgtttccctcctagattatttctcttctt 19459358  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 149
Target Start/End: Complemental strand, 19557168 - 19557036
Alignment:
Q  23 cgagaggtggaggatcacttgttttgtagatgtaacttggttgcggaaatttggtatttgatctttaaatggattggaacggtg-tcattctacc----- 116  Q
    |||||||||||||||| ||| |||||||||||||||||   ||| || ||||| ||||  || ||||||||||| ||||||| | ||||||||||         
T  19557168 cgagaggtggaggatcgcttattttgtagatgtaacttcactgcagacatttgatattcaatttttaaatggatcggaacggagatcattctacctagaa 19557069  T
Q  117 atgtggtctccctcatagattatttctcttctt 149  Q
     ||| || |||||| ||||||||||||||||||    
T  19557068 gtgttgtttccctcctagattatttctcttctt 19557036  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 5831642 - 5831587
Alignment:
Q  29 gtggaggatcacttgttttgtagatgtaacttggttgcggaaatttggtatttgat 84  Q
    ||||||||||||||||||||||||| ||| || |||| |||||||| |||||||||    
T  5831642 gtggaggatcacttgttttgtagatctaattttgttgtggaaatttagtatttgat 5831587  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 19409224 - 19409267
Alignment:
Q  23 cgagaggtggaggatcacttgttttgtagatgtaacttggttgc 66  Q
    ||||||||| |||||||||||||||||||| ||||||| |||||    
T  19409224 cgagaggtgaaggatcacttgttttgtagaagtaacttcgttgc 19409267  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 19456243 - 19456286
Alignment:
Q  23 cgagaggtggaggatcacttgttttgtagatgtaacttggttgc 66  Q
    ||||||||| |||||||||||||||||||| ||||||| |||||    
T  19456243 cgagaggtgaaggatcacttgttttgtagaagtaacttcgttgc 19456286  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 19524834 - 19524791
Alignment:
Q  23 cgagaggtggaggatcacttgttttgtagatgtaacttggttgc 66  Q
    ||||||||| |||||||||||||||||||| ||||||| |||||    
T  19524834 cgagaggtgaaggatcacttgttttgtagaagtaacttcgttgc 19524791  T

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Target: scaffold0653 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0653
Description:

Target: scaffold0653; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 55
Target Start/End: Original strand, 964 - 994
Alignment:
Q  25 agaggtggaggatcacttgttttgtagatgt 55  Q
    |||||||||||||||||||||||||||||||    
T  964 agaggtggaggatcacttgttttgtagatgt 994  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 55
Target Start/End: Complemental strand, 9287353 - 9287323
Alignment:
Q  25 agaggtggaggatcacttgttttgtagatgt 55  Q
    |||||||||||||||||||||||||||||||    
T  9287353 agaggtggaggatcacttgttttgtagatgt 9287323  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 55
Target Start/End: Complemental strand, 9297145 - 9297115
Alignment:
Q  25 agaggtggaggatcacttgttttgtagatgt 55  Q
    |||||||||||||||||||||||||||||||    
T  9297145 agaggtggaggatcacttgttttgtagatgt 9297115  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 55
Target Start/End: Complemental strand, 35752722 - 35752692
Alignment:
Q  25 agaggtggaggatcacttgttttgtagatgt 55  Q
    |||||||||||||||||||||||||||||||    
T  35752722 agaggtggaggatcacttgttttgtagatgt 35752692  T

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