View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21391_high_16 (Length: 247)
Name: NF21391_high_16
Description: NF21391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21391_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 9093875 - 9093656
Alignment:
| Q |
18 |
gaagaagcatccatttcgatctctgcaacgattttcacatataatagtcatccatgaaatctcaaatccatacaccaacgccttatgaatgacttcataa |
117 |
Q |
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|||| |||||| |||| ||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9093875 |
gaaggagcatcgattttgatctctgcaatgatttgcacatataagagtcatccatgaaatctcaaatccatacaccaacgccttatgaatgacttcataa |
9093776 |
T |
|
| Q |
118 |
gaacgtaattgatttcttcgcaaacctgaccaagaagttggaacaataaagttcacatgacaaccaacttgaaagtcttcgacaattaaatcaccagcca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9093775 |
gaacgtaattgatttcttcgcaaacctgaccaagaagttggagcaataaagttcacatgacaaccaacttgaaagtcttcgacaattaaatcaccagcca |
9093676 |
T |
|
| Q |
218 |
tagcataaaagtagcctttg |
237 |
Q |
| |
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|||||||||||||||||||| |
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| T |
9093675 |
tagcataaaagtagcctttg |
9093656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 69 - 224
Target Start/End: Complemental strand, 8864510 - 8864355
Alignment:
| Q |
69 |
ccatgaaatctcaaatccatacaccaacgccttatgaatgacttcataagaacgtaattgatttcttcgcaaacctgaccaagaagttggaacaataaag |
168 |
Q |
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||||||||| ||||||||||| ||||| || || || ||||| ||||| ||| ||| |||||||||| ||||||||||||||||||||||| || || |
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| T |
8864510 |
ccatgaaatatcaaatccatataccaatgctttgtgcatgacatcataggaaagtacttgatttctttgcaaacctgaccaagaagttggagtaaccaat |
8864411 |
T |
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| Q |
169 |
ttcacatgacaaccaacttgaaagtcttcgacaattaaatcaccagccatagcata |
224 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
8864410 |
ttcacatgacaaccaacttgaaaatcttgagcaattaaatcaccagccatagcata |
8864355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 69 - 226
Target Start/End: Complemental strand, 9136893 - 9136736
Alignment:
| Q |
69 |
ccatgaaatctcaaatccatacaccaacgccttatgaatgacttcataagaacgtaattgatttcttcgcaaacctgaccaagaagttggaacaataaag |
168 |
Q |
| |
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|||||||| ||||||||||||||| ||||||||||||||||| ||||| | | |||||||||||||| ||||||| |||||||||||| || || | |
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| T |
9136893 |
ccatgaaacctcaaatccatacactaacgccttatgaatgacatcatatgtaagtaattgatttctttgcaaacccgaccaagaagttagagtaactgat |
9136794 |
T |
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| Q |
169 |
ttcacatgacaaccaacttgaaagtcttcgacaattaaatcaccagccatagcataaa |
226 |
Q |
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||||||||||| ||||||||||| |||| ||| ||||||||||||||||||||||| |
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| T |
9136793 |
ttcacatgacagccaacttgaaaatcttgagcaactaaatcaccagccatagcataaa |
9136736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 66 - 224
Target Start/End: Original strand, 8971854 - 8972012
Alignment:
| Q |
66 |
catccatgaaatctcaaatccatacaccaacgccttatgaatgacttcataagaacgtaattgatttcttcgcaaacctgaccaagaagttggaacaata |
165 |
Q |
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|||||||||||||||||||||||| || || ||||| ||||||| ||||| ||| |||| | ||||||| |||||| || |||| |||||| || |
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| T |
8971854 |
catccatgaaatctcaaatccatagactaatgccttgtgaatgatatcataggaaagtaacttatttctttccaaacccaacaaagatgttggagtaacc |
8971953 |
T |
|
| Q |
166 |
aagttcacatgacaaccaacttgaaagtcttcgacaattaaatcaccagccatagcata |
224 |
Q |
| |
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|| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
8971954 |
aatttcacatgacaaccaacttgaaaatcttgagcaattaaatcaccagccatagcata |
8972012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 66 - 224
Target Start/End: Original strand, 9006882 - 9007040
Alignment:
| Q |
66 |
catccatgaaatctcaaatccatacaccaacgccttatgaatgacttcataagaacgtaattgatttcttcgcaaacctgaccaagaagttggaacaata |
165 |
Q |
| |
|
|||||||||||||||||||||||| || || ||||| ||||||| ||||| ||| |||| | ||||||| |||||| || |||| |||||| || |
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| T |
9006882 |
catccatgaaatctcaaatccatagactaatgccttgtgaatgatatcataggaaagtaacttatttctttccaaacccaacaaagatgttggagtaacc |
9006981 |
T |
|
| Q |
166 |
aagttcacatgacaaccaacttgaaagtcttcgacaattaaatcaccagccatagcata |
224 |
Q |
| |
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|| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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|
| T |
9006982 |
aatttcacatgacaaccaacttgaaaatcttgagcaattaaatcaccagccatagcata |
9007040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 65 - 226
Target Start/End: Complemental strand, 9100214 - 9100050
Alignment:
| Q |
65 |
tcatccatgaaatctcaaatccatacaccaacgccttatgaatgacttcataagaacgtaattgatttcttcgcaaa---cctgaccaagaagttggaac |
161 |
Q |
| |
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||||||||||||||||||||||||| || |||||||||||||||| ||||| ||| ||| |||||||||| ||||| || |||| ||||| ||| | |
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| T |
9100214 |
tcatccatgaaatctcaaatccatatactaacgccttatgaatgatatcatatgaaagtacttgatttctttgcaaatttcccaaccatgaagtgggagc |
9100115 |
T |
|
| Q |
162 |
aataaagttcacatgacaaccaacttgaaagtcttcgacaattaaatcaccagccatagcataaa |
226 |
Q |
| |
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| || ||| ||||||||||||||||||| |||| ||| ||| | |||||| |||||||||| |
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| T |
9100114 |
cactaacttcgcatgacaaccaacttgaaaatcttgagcaactaatttaccagcaatagcataaa |
9100050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 8868657 - 8868601
Alignment:
| Q |
170 |
tcacatgacaaccaacttgaaagtcttcgacaattaaatcaccagccatagcataaa |
226 |
Q |
| |
|
|||||||||||||||||||||| || || ||||||||||||||||||||||||||| |
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|
| T |
8868657 |
tcacatgacaaccaacttgaaaatcatcagcaattaaatcaccagccatagcataaa |
8868601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 226
Target Start/End: Original strand, 9065124 - 9065278
Alignment:
| Q |
69 |
ccatgaaatctcaaatccatacaccaacgccttatgaatgacttcataagaacgtaattgatttcttcgcaaacctgaccaagaagttggaacaataaag |
168 |
Q |
| |
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|||||||| |||||||||||| || |||||||| |||||| | ||||| ||| | || | |||||| ||||||| ||| ||||||| ||| || || |
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| T |
9065124 |
ccatgaaacctcaaatccatagactaacgccttgtgaatggcatcataggaaag--atcg-tttctttgcaaaccagacaaagaagtgggagtaaccaat |
9065220 |
T |
|
| Q |
169 |
ttcacatgacaaccaacttgaaagtcttcgacaattaaatcaccagccatagcataaa |
226 |
Q |
| |
|
|||||||||||||||||||||||||| || | ||||||||||| | |||||||||| |
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|
| T |
9065221 |
ttcacatgacaaccaacttgaaagtcctcagccgttaaatcaccaactatagcataaa |
9065278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 226
Target Start/End: Complemental strand, 9072671 - 9072514
Alignment:
| Q |
69 |
ccatgaaatctcaaatccatacaccaacgccttatgaatgacttcataagaacgtaattgatttcttcgcaaacctgaccaagaagttggaacaataaag |
168 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| || || | ||||| || || |||||||| | ||||||| | ||||||| ||| |||||| |
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| T |
9072671 |
ccatgaaatctcaaatccatacactaatgccttttgtatttcatcatatgatattacttgatttccttgcaaacccttcaaagaagtgggagtaataaat |
9072572 |
T |
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| Q |
169 |
ttcacatgacaaccaacttgaaagtcttcgacaattaaatcaccagccatagcataaa |
226 |
Q |
| |
|
|||||||||||||||||||| || ||||| || ||| || |||||| |||||||||| |
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|
| T |
9072571 |
ttcacatgacaaccaacttgtaaatcttcagcagttatatgaccagctatagcataaa |
9072514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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