View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21391_high_17 (Length: 245)
Name: NF21391_high_17
Description: NF21391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21391_high_17 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 6e-92; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 47298821 - 47299047
Alignment:
| Q |
19 |
cttatatgggacgatataggttgatccaggaaatgttccagccccaccttttgcaactccaccatacaccccttcaccccatccgaaattcacttcgaag |
118 |
Q |
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||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
47298821 |
cttatatgggacgatataggttgctccaggaaaaggtccagccccaccttttgcaactccaccatacaccccttcaccccatccgaaattcacttctgag |
47298920 |
T |
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| Q |
119 |
aacctagcacgagtcaaatctgaaataatacaagaccttacagttgtaaataaacacagttccttaataaacataagctcggacaacgaatgcatgtatt |
218 |
Q |
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| T |
47298921 |
agcctagcacgagtcaaatctgaaataatacaagaccttacagttgtaaataaacaccgttccttaataaccataagatcggccacagaatgcatgtatt |
47299020 |
T |
|
| Q |
219 |
cctatgtaacttcagcatttaattttc |
245 |
Q |
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||| |||||||||||| |||||||||| |
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| T |
47299021 |
cctctgtaacttcagcttttaattttc |
47299047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 47292214 - 47292440
Alignment:
| Q |
19 |
cttatatgggacgatataggttgatccaggaaatgttccagccccaccttttgcaactccaccatacaccccttcaccccatccgaaattcacttcgaag |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| || |
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| T |
47292214 |
cttatatgggacgatataggttgatccaggaaatgttccagccccaccttttgcaactccaccatacaccccttcaccccaaccaaaattcacttctgag |
47292313 |
T |
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| Q |
119 |
aacctagcacgagtcaaatctgaaataatacaagaccttacagttgtaaataaacacagttccttaataaacataagctcggacaacgaatgcatgtatt |
218 |
Q |
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| T |
47292314 |
agcctagcacgagtcaaatctgagataacacaagaccttacagttgtaaataaacaccgttccttaataaccataagatcggccacagaatgcatgtatt |
47292413 |
T |
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| Q |
219 |
cctatgtaacttcagcatttaattttc |
245 |
Q |
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||| ||||||||||| |||||||||| |
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| T |
47292414 |
cctcagtaacttcagcttttaattttc |
47292440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 47283999 - 47283788
Alignment:
| Q |
19 |
cttatatgggacgatataggttgatccaggaaatgttccagccccaccttttgcaactccaccatacaccccttcaccccatccgaaattcacttcgaag |
118 |
Q |
| |
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||||| ||||| ||||| |||| |||||| || | |||||||||||||||| | ||||||||||||||| | ||||||||||||||||||||||| | |
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| T |
47283999 |
cttatgtgggattatatacgttgctccaggtaaaggtccagccccaccttttaccactccaccatacaccgcctcaccccatccgaaattcacttctgcg |
47283900 |
T |
|
| Q |
119 |
aacctagcacgagtcaaatctgaaataatacaagaccttacagttgtaaataaacacagttccttaataaacataagctcggacaacgaatgcatgtatt |
218 |
Q |
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|| ||||||||||||| ||||| | || ||| || ||||| |||||||||||||| |||||||||||| |||||| || | ||| ||||||||||||| |
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| T |
47283899 |
tacttagcacgagtcaagtctgatacaacacacgatcttactgttgtaaataaacatcgttccttaataaccataagatctgccaaagaatgcatgtatt |
47283800 |
T |
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| Q |
219 |
cctatgtaactt |
230 |
Q |
| |
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| | |||||||| |
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| T |
47283799 |
cttctgtaactt |
47283788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 47268034 - 47267808
Alignment:
| Q |
19 |
cttatatgggacgatataggttgatccaggaaatgttccagccccaccttttgcaactccaccatacaccccttcaccccatccgaaattcacttcgaag |
118 |
Q |
| |
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||||| ||||| |||||||| || ||||||||| | |||||||||| ||||||| ||||||||||||| | ||||||||||| |||| |||||| |
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| T |
47268034 |
cttatgtgggatgatataggctgctccaggaaaaggcccagccccactttttgcagctccaccatacacggcctcaccccatccaaaatccacttctctt |
47267935 |
T |
|
| Q |
119 |
aacctagcacgagtcaaatctgaaataatacaagaccttacagttgtaaataaacacagttccttaataaacataagctcggacaacgaatgcatgtatt |
218 |
Q |
| |
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||| | |||||| | |||||||| || ||||||||||| |||||||||||||||| | || ||||||| |||||| || | | |||||||| |||| |
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| T |
47267934 |
aactttatacgagttacatctgaaacaacacaagaccttatagttgtaaataaacaccgctctttaataaccataagatctgctacagaatgcatatatt |
47267835 |
T |
|
| Q |
219 |
cctatgtaacttcagcatttaattttc |
245 |
Q |
| |
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||| |||||||||||| |||||||||| |
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| T |
47267834 |
cctctgtaacttcagcttttaattttc |
47267808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 230
Target Start/End: Complemental strand, 47279348 - 47279195
Alignment:
| Q |
77 |
ccaccatacaccccttcaccccatccgaaattcacttcgaagaacctagcacgagtcaaatctgaaataatacaagaccttacagttgtaaataaacaca |
176 |
Q |
| |
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|||||||||||| | ||||||||||| ||||||||||| | || ||||||||||||| ||||| | || |||||| |||| |||||||||||||| |
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| T |
47279348 |
ccaccatacaccgcctcaccccatccaaaattcacttctgcgtacttagcacgagtcaagtctgatacaacacaagatcttattgttgtaaataaacatc |
47279249 |
T |
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| Q |
177 |
gttccttaataaacataagctcggacaacgaatgcatgtattcctatgtaactt |
230 |
Q |
| |
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|||||||||||| |||||| || | ||| |||||||||||||| | |||||||| |
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| T |
47279248 |
gttccttaataaccataagatctgccaaagaatgcatgtattcttctgtaactt |
47279195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 230
Target Start/End: Complemental strand, 47243087 - 47242919
Alignment:
| Q |
62 |
ccaccttttgcaactccaccatacaccccttcaccccatccgaaattcacttcgaagaacctagcacgagtcaaatctgaaataatacaagaccttacag |
161 |
Q |
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||||||||| | ||||||||||| | |||||||||||||||||||||||| |||| ||||||||||| |||| || | ||||||| ||| ||| |
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| T |
47243087 |
ccaccttttactactccaccatatattgtttcaccccatccgaaattcacttctgagaaattagcacgagtccaatccgacactatacaagttcttccag |
47242988 |
T |
|
| Q |
162 |
ttgtaaataaacacagttccttaataaacataagctcggacaacgaatgcatgtattcctatgtaactt |
230 |
Q |
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||||||||||||| |||||||||||| ||||| || | || |||||||||||||||| |||||||| |
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| T |
47242987 |
ttgtaaataaacatcgttccttaataaccataaaatctgctaaagaatgcatgtattcctctgtaactt |
47242919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 194
Target Start/End: Complemental strand, 47257214 - 47257082
Alignment:
| Q |
62 |
ccaccttttgcaactccaccatacaccccttcaccccatccgaaattcacttcgaagaacctagcacgagtcaaatctgaaataatacaagaccttacag |
161 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||| ||||||| | ||||| | ||| | |
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| T |
47257214 |
ccaccttttgctgctccaccatacacagcttcaccccatccgaaattcacttctgagaacttagcacgagtccaatctgacaccatacatgttcttccct |
47257115 |
T |
|
| Q |
162 |
ttgtaaataaacacagttccttaataaacataa |
194 |
Q |
| |
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||||||||||||| |||||||||||| ||||| |
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| T |
47257114 |
ttgtaaataaacatcgttccttaataaccataa |
47257082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 56 - 187
Target Start/End: Complemental strand, 20519769 - 20519638
Alignment:
| Q |
56 |
ccagccccaccttttgcaactccaccatacaccccttcaccccatccgaaattcacttcgaagaacctagcacgagtcaaatctgaaataatacaagacc |
155 |
Q |
| |
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||||||||| |||||||||||||||||||| | | ||||||||||| ||||||||||| |||| ||||||| ||||||||||| |||| |||| | | |
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| T |
20519769 |
ccagccccagcttttgcaactccaccatacttcgcctcaccccatccaaaattcacttctctgaacttagcacgtgtcaaatctgacataacacaacaac |
20519670 |
T |
|
| Q |
156 |
ttacagttgtaaataaacacagttccttaata |
187 |
Q |
| |
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|||||||||||| |||||| ||||||||||| |
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| T |
20519669 |
ttacagttgtaagtaaacatcgttccttaata |
20519638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 62 - 230
Target Start/End: Complemental strand, 32731754 - 32731586
Alignment:
| Q |
62 |
ccaccttttgcaactccaccatacaccccttcaccccatccgaaattcacttcgaagaacctagcacgagtcaaatctgaaataatacaagaccttacag |
161 |
Q |
| |
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||||||||| | ||||||||||||| |||||||||||||||||||||||| | || ||||||||||| ||||||| | ||||||| ||| | | |
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| T |
32731754 |
ccaccttttactactccaccatacattgtttcaccccatccgaaattcacttctgataaattagcacgagtccaatctgacaccatacaagttcttccgg |
32731655 |
T |
|
| Q |
162 |
ttgtaaataaacacagttccttaataaacataagctcggacaacgaatgcatgtattcctatgtaactt |
230 |
Q |
| |
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||||||||||||| |||||||||||| |||| || | || |||||||||||||||| |||||||| |
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| T |
32731654 |
ttgtaaataaacatcgttccttaataaccatacaatctgctaaagaatgcatgtattcctctgtaactt |
32731586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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