View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21391_high_21 (Length: 220)
Name: NF21391_high_21
Description: NF21391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21391_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 15306027 - 15306233
Alignment:
| Q |
1 |
ctgttagtacaagtcttttgcgagtttctgctacaatgagtttgtgctgatcatattactttatattctgctaggtaaagcgaaaatcttgtttctacta |
100 |
Q |
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| T |
15306027 |
ctgttagtacaagtcttttgcgagtttctgctacaatgagtttgtgctgatcatattactgcatattctgctaggtaaagcgaaaatcttgtttctacta |
15306126 |
T |
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| Q |
101 |
cctacctgattcacttcctataaggtatgttttcccaaagatgagagaaacatggtttcttcatgtggaagtggggcatttaaaattgcgacttcatagt |
200 |
Q |
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| T |
15306127 |
cctacctgattcacttcctataaggtatgttttcccaaagatgagagaaacatggtttcttcatgtggaagtggggcatttaaaattgcgacttcatagt |
15306226 |
T |
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| Q |
201 |
ttaccct |
207 |
Q |
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||||||| |
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| T |
15306227 |
ttaccct |
15306233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 156
Target Start/End: Original strand, 15314474 - 15314617
Alignment:
| Q |
13 |
gtcttttgcgagtttctgctacaatgagtttgtgctgatcatattactttatattctgctaggtaaagcgaaaatcttgtttctactacctacctgattc |
112 |
Q |
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|||||||| |||||||| |||||| |||| ||||||||| |||| || |||||||||||||| ||||||||||| | ||||||||||| |||||||| |
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| T |
15314474 |
gtcttttgtgagtttcttctacaacgagtctgtgctgattgtattcctgcatattctgctaggtgaagcgaaaatcaagcttctactacctgcctgattc |
15314573 |
T |
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| Q |
113 |
acttcctataaggtatgttttcccaaagatgagagaaacatggt |
156 |
Q |
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||||||||||| ||||||||||||||||| |||||| ||||||| |
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| T |
15314574 |
acttcctataaagtatgttttcccaaagacgagagatacatggt |
15314617 |
T |
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