View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21391_low_11 (Length: 353)
Name: NF21391_low_11
Description: NF21391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21391_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 6127415 - 6127747
Alignment:
| Q |
1 |
caatatataactaaatcaaaaaattattatggttatggatttaaagttgaaattgatcccaagcttaaataaaggaacttctttctcatggattattctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
6127415 |
caatatataactaaatcaaaaaattattatggtgatggatttaaagttgaaattgatcccaagcttaaataaaggaacttctttctcatggattattttt |
6127514 |
T |
|
| Q |
101 |
ctcacagtgtgactttaatgtttaaattgatctcacaatgcaactttgatgtcactttgtaagcataaattgatctcatcaggggaagaaagttaccaat |
200 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6127515 |
ctcacagtgtaactttgatgtttaaattgatctcacaatgcaactttgatgtcactttgtaagcataaattgatctcattaggggaagaaagttaccaat |
6127614 |
T |
|
| Q |
201 |
gctttggaaggaactggtagttcagaaagtttatttaaagttgatgtgtgttagatataatatagatagaccatgataagtttatgtggaatgctctaat |
300 |
Q |
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|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
6127615 |
gctttggaaggaactggtggttcagaaagtttatttaaagttgatgtgtgttagatataatataaatggaccatgataagtttatgtggaatgctctaat |
6127714 |
T |
|
| Q |
301 |
ctaacgttgaaataaatgggtccattatgaacc |
333 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
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| T |
6127715 |
ctaacgttgaaataaatggatccattatgaacc |
6127747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 44398574 - 44398809
Alignment:
| Q |
1 |
caatatataactaaatcaaaaaattattatggttatggatttaaagttgaaattgatcccaagcttaaataaaggaacttctttctcatggattattctt |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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|
| T |
44398574 |
caatatataactaaatcagaaaattattatggtgatggatttaaagttgaaattgatcccaagcttaaatagaggaacttctttctcatcgattattctt |
44398673 |
T |
|
| Q |
101 |
ctcacagtgtgactttaatgtttaaattgatctcacaatgcaactttgatgtcactttgtaagcataaattgatctcatcaggggaagaaagttaccaat |
200 |
Q |
| |
|
|||||| ||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44398674 |
ctcacaatgtaactttgatgtttaaattgatctcacaatgcaactttgatgtaactttgtaagcataaattgatctcattaggggaagaaagttaccaat |
44398773 |
T |
|
| Q |
201 |
gctttggaaggaactggtagttcagaaagtttattt |
236 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||| |
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|
| T |
44398774 |
gctttggaaggaactggtggtttagaaagtttattt |
44398809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 43811173 - 43811397
Alignment:
| Q |
1 |
caatatataactaaatcaaaaaattattatggttatggatttaaagttgaaattgatcccaagcttaaataaaggaacttctttctcatggattattctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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|
| T |
43811173 |
caatatataactaaatcaaaaaattattatggtgatggatttaaagttgaaattgatcccaaacttaaatagaggaacttctttctcatggattattctt |
43811272 |
T |
|
| Q |
101 |
ctcacagtgtgactttaatgtttaaattgatctcacaatgcaactttgatgtcactttgtaagcataaattgatctcatcaggggaagaaagttaccaat |
200 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||| |||||||| |
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|
| T |
43811273 |
ctcacagtgtaactttgatgtttaaattgatctcacaatgca-----------actttgtaaccataaattgatctcattaggggaagaaaattaccaat |
43811361 |
T |
|
| Q |
201 |
gctttggaaggaactggtagttcagaaagtttattt |
236 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |
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|
| T |
43811362 |
gctttggaaggaactggtggttcagaaagtttattt |
43811397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 236 - 329
Target Start/End: Original strand, 44398866 - 44398959
Alignment:
| Q |
236 |
taaagttgatgtgtgttagatataatatagatagaccatgataagtttatgtggaatgctctaatctaacgttgaaataaatgggtccattatg |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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|
| T |
44398866 |
taaagttgatgtgtgttagatataatatagatagaccatgataagtttatgtggaatgctctaatctaacattgaaataaattggtccattatg |
44398959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 236 - 329
Target Start/End: Original strand, 43811454 - 43811547
Alignment:
| Q |
236 |
taaagttgatgtgtgttagatataatatagatagaccatgataagtttatgtggaatgctctaatctaacgttgaaataaatgggtccattatg |
329 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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|
| T |
43811454 |
taaagttgatgtgcgttagatataatatagatagaccatgataagtttatgtggaatgctctaatctaaagttgaaataaatgagtccattatg |
43811547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 14659353 - 14659570
Alignment:
| Q |
1 |
caatatataactaaatcaaaaaattattatggttatggatttaaagttgaaattgatcccaagcttaaataaaggaacttctttctcatggattattctt |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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|
| T |
14659353 |
caatatataaccaaatcaaaaaattattatggtgatggatttaaagttgaaattgatcccaagcttaaatagaggaatttctttctcatggattattctt |
14659452 |
T |
|
| Q |
101 |
ctcacagtgtgactttaatgtttaaattgatctcacaatgcaactttgatgtcactttgtaagcataaattgatctcatcaggggaagaaagttaccaat |
200 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||| |
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|
| T |
14659453 |
ctcacagtgtaactttgatgtttaaattgatctcacaatgcaactttgatg------------------ttgatctcattaagggaagaaagttaccaat |
14659534 |
T |
|
| Q |
201 |
gctttggaaggaactggtagttcagaaagtttattt |
236 |
Q |
| |
|
||| ||||||||||||| ||||| ||||||||||| |
|
|
| T |
14659535 |
acttaggaaggaactggtggttcaaaaagtttattt |
14659570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 247 - 328
Target Start/End: Original strand, 14659636 - 14659717
Alignment:
| Q |
247 |
tgtgttagatataatatagatagaccatgataagtttatgtggaatgctctaatctaacgttgaaataaatgggtccattat |
328 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14659636 |
tgtgttagatataatataaatagaccatgataagtttatctggagtgctctaatctaacgttgaaataaatgggtccattat |
14659717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 312
Target Start/End: Complemental strand, 44825823 - 44825765
Alignment:
| Q |
254 |
gatataatatagatagaccatgataagtttatgtggaatgctctaatctaacgttgaaa |
312 |
Q |
| |
|
|||||||| ||||| |||||||||||| || |||||||||||||||||| | |||||| |
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|
| T |
44825823 |
gatataatgtagatggaccatgataagctttagtggaatgctctaatctatcattgaaa |
44825765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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