View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21391_low_12 (Length: 302)
Name: NF21391_low_12
Description: NF21391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21391_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 9 - 286
Target Start/End: Original strand, 44473530 - 44473807
Alignment:
| Q |
9 |
agcagagatccgtacaactttcttctcgtgcccaaaaacttgaagtggcacctgaaacattacagacaagtgaataaaatatcgcaaacaagaaaatgct |
108 |
Q |
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| T |
44473530 |
agcagagatccgtacaactttcttctcgtgcccaaaaacttgaagtggcacctgaaacattacagacaagtgaataaaatatcgcaaacaagaaaatgct |
44473629 |
T |
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| Q |
109 |
ggcaagtaatgcactcatgaacattagagcaaaagaacaagatgttgcaattgtcatcagtttacttgacaaaaatacaggaaaaaaggcaaagtaatca |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44473630 |
ggcaagtaatgcactcatgaacattagagcaaaagaacaagatgttgcaattgtcatcagtttacttgacaaaaatacaggaaaaaaggcaaagtaatca |
44473729 |
T |
|
| Q |
209 |
tacaactgagtagggtttactctccgatgtaccgagctgtccaaaatcattgagaccagtagcataaacacatccatt |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44473730 |
tacaactgagtagggtttactctccgatgtaccgagctgtccaaaatcattgagaccagtagcataaacacatccatt |
44473807 |
T |
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