View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21391_low_2 (Length: 637)
Name: NF21391_low_2
Description: NF21391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21391_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 16 - 623
Target Start/End: Original strand, 25898381 - 25898990
Alignment:
| Q |
16 |
cataggaacaatattaaagcacacaacttataggaacataggaattaggagtatcatgggagaaaaactcaaaacacaatgccattgtctgaggcataac |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25898381 |
cataggaacaatattaaagcacacaacttataggaacataggaattaggagtatcatgggagaaaaactcaaaacacaatgccattgtctgaggcataac |
25898480 |
T |
|
| Q |
116 |
aggtatttacaacaaaataaaacacatgaagaggaaccttatatgatatgcttgcaagtctaatgacgacctttctggcgaacaatctcaacaaatagtg |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25898481 |
aggtatttacaacaaaataaaacacatgaagaggaaccttatatgatatgcttgcaagtctaatgacgacctttctggcgaacaatctcaacaaatagtg |
25898580 |
T |
|
| Q |
216 |
agttaggaggatcctcaagatcaaagaccaaactatcctcttgacgcaatttactatccttcagaaatttgttccaatcttcctctaaatatttttcatt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25898581 |
agttaggaggatcctcaagatcaaagaccaaactatccccttgacgcaatttactatccttcagaaatttgttccaatcttcctctaaatatttttcatt |
25898680 |
T |
|
| Q |
316 |
cggacccctatttaaagtgataagtttgccgtcatattttttggcggtattccaatcctgcaatgtaatgctctcttgtgtgtcgggaatgacattgatc |
415 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25898681 |
cggacccctatttaaagtgataagtttgcagtcatattttttggcggtattccaatcctgcaatgtaatgctctcttgtgtgtcgggaatgacattgatc |
25898780 |
T |
|
| Q |
416 |
gagatcgtattggggaagtgctag--aagnnnnnnnnnctaacatgctttagtaaccaactaaatatcgaataactaaatcggtaagttatgataatttg |
513 |
Q |
| |
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|||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25898781 |
gagatcatattggggaagtgctagaaaaaaaaaaaaaactaacatgctttagtaaccaactaaatattgaataactaaatcggtaagttatgataatttg |
25898880 |
T |
|
| Q |
514 |
aaacttttaggagtgtgctaaatgaccatgatgcaattgtgattatagttcaagttgaaatagagttctataagtagaatatatagctaagaaagttgga |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25898881 |
aaacttttaggagtgtgctaaatgaccatgatgcaattgtgattatagttcaagttgaaatagagttctataagtagaatatatagctaagaaagttgga |
25898980 |
T |
|
| Q |
614 |
gaacattgtg |
623 |
Q |
| |
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|||||||||| |
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| T |
25898981 |
gaacattgtg |
25898990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 197 - 441
Target Start/End: Original strand, 37422999 - 37423242
Alignment:
| Q |
197 |
acaatctcaacaaatagtgagttaggaggatcctcaagatcaaagaccaaactatcctcttgacgcaatttactatccttcagaaatttgttccaatctt |
296 |
Q |
| |
|
|||||||||||||||| ||| | ||||| || | || || |||| ||| |||||| |||||||||||| |||| |||||||||||||||||||| | |
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| T |
37422999 |
acaatctcaacaaataatgactccggagggtcttgcagttcgaagaacaacctatccctttgacgcaatttgttatc-ttcagaaatttgttccaatcct |
37423097 |
T |
|
| Q |
297 |
cctctaaatatttttcattcggacccctatttaaagtgataagtttgccgtcatattttttggcggtattccaatcctgcaatgtaatgctctcttgtgt |
396 |
Q |
| |
|
| ||| |||||||||||| |||||||| ||| ||||| ||||||||| || |||| ||| ||||||||||| | ||||||||| | | ||||| |
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| T |
37423098 |
ctcctagatatttttcatttggacccctgtttgaagtggtaagtttgcactcgtattgtttttgggtattccaattcactaatgtaatggtgtactgtgt |
37423197 |
T |
|
| Q |
397 |
gtcgggaatgacattgatcgagatcgtattggggaagtgctagaa |
441 |
Q |
| |
|
||| |||| || ||||| |||||| ||||||||||||||||||| |
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|
| T |
37423198 |
gtccggaagtacgttgatggagatcatattggggaagtgctagaa |
37423242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 46006486 - 46006442
Alignment:
| Q |
16 |
cataggaacaatattaaagcacacaacttataggaacataggaat |
60 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||| |
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|
| T |
46006486 |
cataggaacaatattaaagcacataaattataggaacataggaat |
46006442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 12866236 - 12866192
Alignment:
| Q |
16 |
cataggaacaatattaaagcacacaacttataggaacataggaat |
60 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||| |
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|
| T |
12866236 |
cataggaacaatattaaagcacataaattataggaacataggaat |
12866192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 12834258 - 12834214
Alignment:
| Q |
16 |
cataggaacaatattaaagcacacaacttataggaacataggaat |
60 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||| ||||||| |
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|
| T |
12834258 |
cataggaacaatattaaagcacataaattataggaacgtaggaat |
12834214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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