View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21391_low_4 (Length: 509)
Name: NF21391_low_4
Description: NF21391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21391_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 39825303 - 39825531
Alignment:
| Q |
1 |
aaaaaggacgtttcaggtttataagtggggataataatattcttgtttcttgctaaaagagactcatcatgaataaactcatatcccgaaaaaacatatt |
100 |
Q |
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| T |
39825303 |
aaaagggacgtttcaggtttataagtggggataataatattcttgtttcttgctaaaagagactgatcatgaataaactcatatcccgaaaaaacatatt |
39825402 |
T |
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| Q |
101 |
tgaagtcaaattaagtaaaagagaccgttcttaaaaaaggtaacaggctttatcagatatgtactgaaaaacagaaatcattttcatggctacaaaagag |
200 |
Q |
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| T |
39825403 |
tgaagtcaaattaagtaaaagagaccgttcttaaaaaaggtaacaggctttatcagatatgtactgaaaaacagaaatcattttcatggctacaaaagag |
39825502 |
T |
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| Q |
201 |
aaagatacccttttcttctgaggttagga |
229 |
Q |
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| T |
39825503 |
aaagatacccttttcttctgaggttagga |
39825531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 286 - 494
Target Start/End: Original strand, 39825584 - 39825790
Alignment:
| Q |
286 |
tacctgtaatctgtaaattgtagtattggattttggtggcatgtgaagtagccggccacaaaattgtttgtatttgagagttgagattttgtcgtgtatt |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39825584 |
tacctgtaatctgtaaattgtagtattggattttggtggcatgtgaagtagccggccacaaaattgtttgtatttgag--ttgagattttgtcgtgtatt |
39825681 |
T |
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| Q |
386 |
tgattcactctttcatctcacgggtcatttgcataatgaacaaatcatttttgggtacttttctcttttcaagcactttctgtgttttgccttgatgtgt |
485 |
Q |
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| T |
39825682 |
tgattcactctttcatctcacgggtcatttgcataatgaacaaatcatttttgggtacttttcttttttcaagcactttctgtgttttgccttgatgtgt |
39825781 |
T |
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| Q |
486 |
atagggttt |
494 |
Q |
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| T |
39825782 |
atagggttt |
39825790 |
T |
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