View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21391_low_5 (Length: 465)
Name: NF21391_low_5
Description: NF21391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21391_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 18 - 458
Target Start/End: Original strand, 36539519 - 36539955
Alignment:
| Q |
18 |
caactcaagttccaagattgaactaaagaggatgcacatcgccactggatttatcagtgatcactgaatgcagcaacatgtccccaacaatcttcctcac |
117 |
Q |
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| T |
36539519 |
caactcaagttccaagattgaactaaagaggatgcacatcgccactggatttatcagtgatcactgaatgcagcaacatgtccccaacaatcttcctcac |
36539618 |
T |
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| Q |
118 |
ttgatttacccatgtttctcttgtaatcttttgctcctgagccccaacataatttagttttaatcacttattaccgcaaatctaagtaacaaagcattgc |
217 |
Q |
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| T |
36539619 |
ttgatttacccatgtttctcttgtaatcttttgctcctgagccccaacataatttagttttaatcacttattaccgcaaatctaagtaacaaagcattgc |
36539718 |
T |
|
| Q |
218 |
atatatacaagacaaaatactaacaaccttaaagcatagcatggcaattataaaaatattgtttacttacttggtaaatacggcagcttttgagtaacag |
317 |
Q |
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| T |
36539719 |
atatatacaagacaacatactaacaaccttaaagcatagcatggcaattataaaaatattgtttacttacttggtaaatacggcagcttttgagtaacag |
36539818 |
T |
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| Q |
318 |
agacatttgtgatggtttcaaatgatttgaaacttttgccactagattaggtaacaatacatattctgattggggttttagtgtcccaaatacaccttga |
417 |
Q |
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| T |
36539819 |
agacatttgtgatggtttcaaatgatttgaaacttttgccactagattaggtaacaatacatattctgattggggttttagtgtcccaaatacaccttga |
36539918 |
T |
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| Q |
418 |
tctgttccaaaatcaatatatggttagtagttaagcctttg |
458 |
Q |
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| T |
36539919 |
tctgttccaa----aatatatggttagtagttaagcctttg |
36539955 |
T |
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