View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21391_low_9 (Length: 418)
Name: NF21391_low_9
Description: NF21391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21391_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 41299291 - 41299534
Alignment:
| Q |
18 |
gtttcaactgatggaaaatggtgttatatagtattttgggtggtgggaaaagaaaaaacaaggtggagtttgttgaagaaaagactaattgctgcttgtc |
117 |
Q |
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| T |
41299291 |
gtttcaactgatggaaaatggtgttatatagtattttgggtggtgggaaaagaaaaaacaaggtggagtttgttgaagaaaagactaattgctgcttgtc |
41299390 |
T |
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| Q |
118 |
ctacttgttcttctgcttctggattttcttatttctgctctgatttgcagaatcaaaagcctcctgatgtttttcttttgaagttttgttgcaaagatcg |
217 |
Q |
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| T |
41299391 |
ctacttgttcttctgcttctggattttcttatttctgctctgatttgcagaatcaaaagcctcctgatgtttttcttttgaagttttgttgcaaagatcg |
41299490 |
T |
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| Q |
218 |
gaaaggtcttttacatggtaattaatcttgggaaactccatttt |
261 |
Q |
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| T |
41299491 |
gaaaggtcttttacatggtaattaatcttgggaaactccatttt |
41299534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 258 - 404
Target Start/End: Original strand, 41299561 - 41299707
Alignment:
| Q |
258 |
ttttccgattaaattgaattgtattataattgattttatttaatctagaccatcaaattgattttagtgaaattatagttgttgaaatgaattagaattg |
357 |
Q |
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| T |
41299561 |
ttttccgattaaattgaattgtattataattgattttatttaatctagaccatcaaattgattttagtgaaattatagttgttgaaatgaattagaattg |
41299660 |
T |
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| Q |
358 |
attttgaattctatcaaactaaaccctcttgggttggtctggtgatg |
404 |
Q |
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| T |
41299661 |
attttgaattctatcaaactaaaccctcttgggttggtcgggtgatg |
41299707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 27664932 - 27664713
Alignment:
| Q |
21 |
tcaactgatggaaaatggtgttatatagtattttgggtggtgggaaaagaaaaaacaaggtggagtttgttgaagaaaagactaattgctgcttgtccta |
120 |
Q |
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|||||||||||||| |||||||| ||||| ||||||||||| || ||| | || ||||||||||||||||||||||| || | ||| || ||||||| |
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| T |
27664932 |
tcaactgatggaaagtggtgttacatagttttttgggtggttgggaaacagaagacaaggtggagtttgttgaagaagaggatggttgaagcatgtccta |
27664833 |
T |
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| Q |
121 |
cttgttcttctgcttctggattttcttatttctgctctgatttgcagaatcaaaagcctcctgatgtttttcttttgaagttttgttgcaaagatcggaa |
220 |
Q |
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| T |
27664832 |
cttgctcctcagcttctggaatatcatattatcgcactgatttgcagccacctaaggttcctgatgttttccttttgaaattttgctgtcatgatcgaaa |
27664733 |
T |
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| Q |
221 |
aggtcttttacatggtaatt |
240 |
Q |
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| T |
27664732 |
aggactattacacggtaatt |
27664713 |
T |
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