View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21392_high_13 (Length: 352)
Name: NF21392_high_13
Description: NF21392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21392_high_13 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 4 - 352
Target Start/End: Original strand, 34971707 - 34972056
Alignment:
| Q |
4 |
gcagcaccacagacaagggaagaagagccatcatcaaaatcagagaaagaattaatagaacatttctgatcattgttaaagaaatcctcaaaatacttgg |
103 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34971707 |
gcagcatcagagacaagggaagaagagccatcatcaaaatcagagaaagaattaatagaacatttctgatcattgttaaagaaatcctcaaaatacttgg |
34971806 |
T |
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| Q |
104 |
tccaactactctcctcagaagactcaaaacttatcatgttattgttagaaggagctttgcttattgaactcattgaagctattgtttaatttaattttga |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34971807 |
tccaactactctcctcagaagactcaaaacttatcatgttattgttggatggagctttgcttattgaactcattgaagctattgtttaatttaattttga |
34971906 |
T |
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| Q |
204 |
aaagccaacaagagaagataaagaatatatatatgatgtaattagttgagtttggtggctagtt-taaagagggaatgtctctaacataaagcacatata |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34971907 |
aaagccaacaagagaagataaagaatatatatatgatgtaattagttgagtttggtggctagttctaaagagggaatgtctctaacataaagcacatata |
34972006 |
T |
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| Q |
303 |
tagagtatattccaaaataattatgaagaattaattaatatagataaata |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34972007 |
tagagtatattccaaaataattatgaagaattaattaatatagataaata |
34972056 |
T |
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