View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21392_high_16 (Length: 340)
Name: NF21392_high_16
Description: NF21392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21392_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 16440128 - 16439799
Alignment:
| Q |
1 |
taaaaaactggtataacaaggcgaccgtttctcttcaactcaaggatcactatgagttcatccaagcagcagatagaagaggcatagttcccagaaaata |
100 |
Q |
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| T |
16440128 |
taaaaaactggtataacaaggcgaccgtttctcttcaactcaaggatcgctgtgagttcttccaagcaccagatagaagaggcatagttcccagaaaata |
16440029 |
T |
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| Q |
101 |
taatgatggcaatcctggactcttggattgccttcaacagcgatggagtgatctcacttcctattcgaagcgatgaatcatcaatgaaggttcggatccc |
200 |
Q |
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| T |
16440028 |
taatgatggcaatcctggactcttggattgccttcaaaagcgatggagtgatctcacttcctattcgaagcgatgaatcatcaatgaaggtatcgatccc |
16439929 |
T |
|
| Q |
201 |
tttgtcgcacagagctttgtacagatttctggtaaaactaaatcgtgtatcttcagcgctgtggctgatatacacatcgtaagtgaaggaaggtcgcaca |
300 |
Q |
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| T |
16439928 |
tttgtcgcacagagctttgtacagatttctggtaaaactaaatcgtgtatcttcagcgctgtggctgatatacacatcgtaagtgaaggaaggtcgcaca |
16439829 |
T |
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| Q |
301 |
cccattagatcaatggaccagatgtctgtg |
330 |
Q |
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| T |
16439828 |
cccattagatcaatggagcagatgtctgtg |
16439799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 53 - 226
Target Start/End: Original strand, 16373132 - 16373305
Alignment:
| Q |
53 |
tgagttcatccaagcagcagatagaagaggcatagttcccagaaaatataatgatggcaatcctggactcttggattgccttcaacagcgatggagtgat |
152 |
Q |
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| T |
16373132 |
tgagttcatccaagcaaaagctagaagaggcatagttcgtagaaaatataattatacaaatcctagactcttcgattgccttaaaaagcgatggagtgat |
16373231 |
T |
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| Q |
153 |
ctcacttcctattcgaagcgatgaatcatcaatgaaggttcggatccctttgtcgcacagagctttgtacagat |
226 |
Q |
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| T |
16373232 |
ctcatctcctatttgaagctccgaatcatgaatgaaggtacggatccctttgtcagtcagagctttgtacagat |
16373305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 27214409 - 27214360
Alignment:
| Q |
178 |
tcatcaatgaaggttcggatccctttgtcgcacagagctttgtacagatt |
227 |
Q |
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| T |
27214409 |
tcatcaatgaaggttcggattcctttgtcacaaagagctttatagagatt |
27214360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 27234819 - 27234868
Alignment:
| Q |
178 |
tcatcaatgaaggttcggatccctttgtcgcacagagctttgtacagatt |
227 |
Q |
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| T |
27234819 |
tcatcaatgaaggttcggattcctttgtcacaaagagctttatagagatt |
27234868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 26811501 - 26811461
Alignment:
| Q |
178 |
tcatcaatgaaggttcggatccctttgtcgcacagagcttt |
218 |
Q |
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| T |
26811501 |
tcatcaatgaaggttcggattcctttgtcacaaagagcttt |
26811461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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