View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21392_high_19 (Length: 330)

Name: NF21392_high_19
Description: NF21392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21392_high_19
NF21392_high_19
[»] chr1 (9 HSPs)
chr1 (6-189)||(39708913-39709095)
chr1 (6-174)||(34655003-34655171)
chr1 (77-145)||(615823-615891)
chr1 (73-179)||(34118086-34118195)
chr1 (6-137)||(26236618-26236749)
chr1 (73-133)||(11407932-11407993)
chr1 (6-46)||(615786-615826)
chr1 (7-87)||(34117998-34118077)
chr1 (286-327)||(39708813-39708856)
[»] chr2 (14 HSPs)
chr2 (73-177)||(17375391-17375496)
chr2 (73-179)||(1895524-1895631)
chr2 (74-174)||(17281850-17281951)
chr2 (9-126)||(3921620-3921736)
chr2 (74-168)||(1551510-1551605)
chr2 (77-175)||(4869707-4869803)
chr2 (6-87)||(17375302-17375382)
chr2 (6-46)||(34660311-34660351)
chr2 (16-87)||(17281961-17282031)
chr2 (9-47)||(1895438-1895476)
chr2 (112-179)||(34660352-34660417)
chr2 (8-50)||(38531244-38531286)
chr2 (73-133)||(38531147-38531208)
chr2 (6-46)||(4869670-4869710)
[»] chr4 (7 HSPs)
chr4 (80-179)||(53202387-53202487)
chr4 (74-179)||(23054135-23054241)
chr4 (74-179)||(47518352-47518458)
chr4 (73-131)||(6410105-6410164)
chr4 (73-115)||(24957572-24957614)
chr4 (6-63)||(23054273-23054330)
chr4 (9-47)||(34227074-34227112)
[»] chr5 (13 HSPs)
chr5 (73-179)||(7766906-7767013)
chr5 (9-144)||(41355483-41355617)
chr5 (78-179)||(7271893-7271992)
chr5 (73-171)||(27169997-27170097)
chr5 (74-183)||(18697048-18697160)
chr5 (77-145)||(6030323-6030391)
chr5 (77-145)||(26656827-26656895)
chr5 (77-145)||(26928414-26928482)
chr5 (6-87)||(7767022-7767102)
chr5 (6-87)||(18696958-18697038)
chr5 (6-59)||(27170133-27170186)
chr5 (6-46)||(6030388-6030428)
chr5 (6-38)||(7271859-7271891)
[»] chr6 (3 HSPs)
chr6 (75-168)||(20740694-20740788)
chr6 (73-179)||(21881581-21881688)
chr6 (6-50)||(30845582-30845626)
[»] chr7 (2 HSPs)
chr7 (73-173)||(3302689-3302790)
chr7 (6-63)||(3302600-3302657)
[»] chr8 (5 HSPs)
chr8 (76-179)||(10408942-10409046)
chr8 (6-87)||(5994655-5994735)
chr8 (87-174)||(5994757-5994846)
chr8 (75-131)||(6444151-6444208)
chr8 (6-87)||(10408850-10408930)
[»] chr3 (3 HSPs)
chr3 (6-46)||(18269763-18269803)
chr3 (77-135)||(18269708-18269766)
chr3 (6-50)||(43276004-43276048)


Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 6 - 189
Target Start/End: Complemental strand, 39709095 - 39708913
Alignment:
Q  6 agcaccacagaccaacacaaccaaagatccatcaaaaccataacaattcctaagcgaaacccagagacgatccatcaccacctatgttgtgagcaaacat 105  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||    
T  39709095 agcaccacaaaccaacacaaccaaagatccatcaaaaccataacagttcctaagcgaa-cccagatacgatccatcaccacctatattgcgagcaaacat 39708997  T
Q  106 aacctccaccacaaccaagagagaaaacgaatcaaatagttcgagacccagaaaaccaaacaaccaccgacaagtatctaacaa 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39708996 aacctccaccacaaccaagagagaaaacgaatcaaatagttcgagacccagaaaaccaaacaaccaccgacaagcatctaacaa 39708913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 6 - 174
Target Start/End: Original strand, 34655003 - 34655171
Alignment:
Q  6 agcaccacagaccaacacaaccaaagatccatcaaaaccataacaattcctaagcgaaacccagagacgatccatcaccacctatgttgtgagcaaacat 105  Q
    ||||||||| |||||||||| ||||||| |||||||||||||||| ||| |||||||| || ||| | ||||||||||||||||||||| ||||||||||    
T  34655003 agcaccacaaaccaacacaatcaaagatgcatcaaaaccataacatttcataagcgaa-cctagatatgatccatcaccacctatgttgcgagcaaacat 34655101  T
Q  106 aacctccaccacaaccaagagagaaaacgaatcaaatagttcgagaccca-gaaaaccaaacaaccaccg 174  Q
    |||||||||||||||||| ||||||||| |||||||||||  |||||||| ||||||||||||| |||||    
T  34655102 aacctccaccacaaccaaaagagaaaacaaatcaaatagtctgagacccacgaaaaccaaacaaacaccg 34655171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 615823 - 615891
Alignment:
Q  77 ccatcaccacctatgttgtgagcaaacataacctccaccacaaccaagagagaaaacgaatcaaatagt 145  Q
    |||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||    
T  615823 ccatcaccacctatgttgcgatcaaacataatctccaccacaaccaagagagaaaacgaatcaaatagt 615891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 34118086 - 34118195
Alignment:
Q  73 cgatccatcaccacctatgttgtgagcaaacataacctccac--cacaaccaagagagaaaacgaatcaaatagttcgagaccca-gaaaaccaaacaac 169  Q
    |||||||||||||||||||||| |||||||||||||||| ||  ||||||||| ||||||||| ||||||||| |  |||| ||| |||||| |||||||    
T  34118086 cgatccatcaccacctatgttgcgagcaaacataacctctaccacacaaccaatagagaaaacaaatcaaataatctgagatccacgaaaactaaacaac 34118185  T
Q  170 caccgacaag 179  Q
    ||||| ||||    
T  34118186 caccggcaag 34118195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 6 - 137
Target Start/End: Complemental strand, 26236749 - 26236618
Alignment:
Q  6 agcaccacagaccaacacaaccaaagatccatcaaaaccataacaattcctaagcgaaacccagagacgatccatcaccacctatgttgtgagcaaacat 105  Q
    ||||||||| |||||| |||||||||||||||| || ||||||||  || |||| | ||||||||   |||||||||||| |||||||  ||| ||||||    
T  26236749 agcaccacaaaccaacgcaaccaaagatccatcgaacccataacaggtcataagtg-aacccagatctgatccatcaccatctatgtttcgagtaaacat 26236651  T
Q  106 aacctcca-ccacaaccaagagagaaaacgaat 137  Q
    |||||||| |||| ||| |||||||||||||||    
T  26236650 aacctccatccaccaccgagagagaaaacgaat 26236618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 73 - 133
Target Start/End: Complemental strand, 11407993 - 11407932
Alignment:
Q  73 cgatccatcaccacctatgttgtgagcaaacataacctcca-ccacaaccaagagagaaaac 133  Q
    |||||||||||||| ||||||| |||||||||||||||||| |||| |||||||||||||||    
T  11407993 cgatccatcaccacttatgttgcgagcaaacataacctccacccaccaccaagagagaaaac 11407932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 615786 - 615826
Alignment:
Q  6 agcaccacagaccaacacaaccaaagatccatcaaaaccat 46  Q
    ||||||||| || ||||||||||||||||||||||||||||    
T  615786 agcaccacaaactaacacaaccaaagatccatcaaaaccat 615826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 34117998 - 34118077
Alignment:
Q  7 gcaccacagaccaacacaaccaaagatccatcaaaaccataacaattcctaagcgaaacccagagacgatccatcaccacc 87  Q
    |||||||| | |||||||||||||||||||   ||||||||||| ||| |||||| |||| ||| | ||||||||||||||    
T  34117998 gcaccacaaatcaacacaaccaaagatccactgaaaccataacagttcataagcg-aacctagatatgatccatcaccacc 34118077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 327
Target Start/End: Complemental strand, 39708856 - 39708813
Alignment:
Q  286 tacaaatcaaccttcacgacgacaaca--acgctccttcaccac 327  Q
    |||||||||||||||||||||||||||  |||||||||||||||    
T  39708856 tacaaatcaaccttcacgacgacaacaacacgctccttcaccac 39708813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 73 - 177
Target Start/End: Original strand, 17375391 - 17375496
Alignment:
Q  73 cgatccatcaccacctatgttgtgagcaaacataacctccaccacaaccaagagagaaaacgaatcaaatagttcgagaccca-gaaaaccaaacaacca 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||| ||| ||||||||||||||||    
T  17375391 cgatccatcaccacctatgttgtgagcaaacataacctccaccacaaccaatagagaaaacgaatcaaatagtgtgagagccacgaaaaccaaacaacca 17375490  T
Q  172 ccgaca 177  Q
    ||||||    
T  17375491 ccgaca 17375496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 1895524 - 1895631
Alignment:
Q  73 cgatccatcaccacctatgttgtgagcaaacataacctccaccacaaccaagagagaaaacgaatcaaatagttcgagaccca-gaaaaccaaacaacca 171  Q
    ||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||  |||||||||||  ||||||||  |||||||||||||||    
T  1895524 cgatcaatcaccacctatgttgcgagcagacataacctccaccacaaccaagagagaaaagaaatcaaatagtctgagacccacaaaaaccaaacaacca 1895623  T
Q  172 ccgacaag 179  Q
    ||||||||    
T  1895624 ccgacaag 1895631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 74 - 174
Target Start/End: Complemental strand, 17281951 - 17281850
Alignment:
Q  74 gatccatcaccacctatgttgtgagcaaacataacctccaccacaaccaagagagaaaacgaatcaaatagttcgagaccca-gaaaaccaaacaaccac 172  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||  |||||| | ||||| |||||||||||    
T  17281951 gatccatcaccacctatgttgcgagcaaacataacctccaccactaccaagagagaaaacaaatcaaatagtctgagacctacgaaaaacaaacaaccac 17281852  T
Q  173 cg 174  Q
    ||    
T  17281851 cg 17281850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 3921620 - 3921736
Alignment:
Q  9 accacagaccaacacaaccaaagatccatcaaaaccataacaattcctaagcgaaacccagagacgatccatcaccacctatgttgtgagcaaacataac 108  Q
    |||||| ||||||||||||||| ||||||||||||||||  | ||| |||||||| |  ||| | ||||||||||||||||||||| |||||||||||||    
T  3921620 accacaaaccaacacaaccaaacatccatcaaaaccatataagttcataagcgaa-cttagatatgatccatcaccacctatgttgcgagcaaacataac 3921718  T
Q  109 ctccaccacaaccaagag 126  Q
     |||||||||||||||||    
T  3921719 atccaccacaaccaagag 3921736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 74 - 168
Target Start/End: Complemental strand, 1551605 - 1551510
Alignment:
Q  74 gatccatcaccacctatgttgtgagcaaacataacctccaccacaaccaagagagaaaacgaatcaaatagttcgagaccca-gaaaaccaaacaa 168  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||| |||||||||||  |||||||| ||||| |||||||    
T  1551605 gatccatcaccacctatgttgcgagcaaacataacatccaccacaaccaatagagaaaacaaatcaaatagtctgagacccacgaaaatcaaacaa 1551510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 175
Target Start/End: Original strand, 4869707 - 4869803
Alignment:
Q  77 ccatcaccacctatgttgtgagcaaacataacctccaccacaaccaagagagaaaacgaatcaaatagttcgagacccag-aaaaccaaacaaccaccga 175  Q
    ||||||||||||||||||  | ||||| ||||||||||| |||||||||||||||||||||||||||||   || ||| | |||||||||||||||||||    
T  4869707 ccatcaccacctatgttgctatcaaacgtaacctccaccgcaaccaagagagaaaacgaatcaaatagt---agccccggtaaaaccaaacaaccaccga 4869803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 6 - 87
Target Start/End: Original strand, 17375302 - 17375382
Alignment:
Q  6 agcaccacagaccaacacaaccaaagatccatcaaaaccataacaattcctaagcgaaacccagagacgatccatcaccacc 87  Q
    ||||||||| |||||||||||||||||| |||| ||||||||||| ||| |||||| |||| ||| | ||||||||||||||    
T  17375302 agcaccacaaaccaacacaaccaaagattcatcgaaaccataacagttcataagcg-aacctagatatgatccatcaccacc 17375382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 34660311 - 34660351
Alignment:
Q  6 agcaccacagaccaacacaaccaaagatccatcaaaaccat 46  Q
    ||||||||| ||||||||||||||||||||||| |||||||    
T  34660311 agcaccacaaaccaacacaaccaaagatccatcgaaaccat 34660351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 17282031 - 17281961
Alignment:
Q  16 accaacacaaccaaagatccatcaaaaccataacaattcctaagcgaaacccagagacgatccatcaccacc 87  Q
    ||||||||||||||||||||||| ||||||||  | ||| ||||| ||||| ||| | ||||||||||||||    
T  17282031 accaacacaaccaaagatccatcgaaaccatataagttcataagc-aaacctagatatgatccatcaccacc 17281961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 1895438 - 1895476
Alignment:
Q  9 accacagaccaacacaaccaaagatccatcaaaaccata 47  Q
    |||||| ||||||||||||||||||||||| ||||||||    
T  1895438 accacaaaccaacacaaccaaagatccatcgaaaccata 1895476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 179
Target Start/End: Original strand, 34660352 - 34660417
Alignment:
Q  112 caccacaaccaagagagaaaacgaatcaaatagttcgagacc-cagaaaaccaaacaaccaccgacaag 179  Q
    ||||||||| ||||||||||||||||||||||||   || ||  | |||||||||||||||||||||||    
T  34660352 caccacaactaagagagaaaacgaatcaaatagt---agccctaataaaaccaaacaaccaccgacaag 34660417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 38531286 - 38531244
Alignment:
Q  8 caccacagaccaacacaaccaaagatccatcaaaaccataaca 50  Q
    ||||||| ||||||||||| ||| |||||||||||||||||||    
T  38531286 caccacaaaccaacacaacaaaaaatccatcaaaaccataaca 38531244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 133
Target Start/End: Complemental strand, 38531208 - 38531147
Alignment:
Q  73 cgatccatcaccacctatgttgtgagcaaacataacctcca-ccacaaccaagagagaaaac 133  Q
    |||||||||||||| ||||||| || |||||| |||||||| |||| ||||||| |||||||    
T  38531208 cgatccatcaccacatatgttgcgaacaaacaaaacctccatccaccaccaagaaagaaaac 38531147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 4869670 - 4869710
Alignment:
Q  6 agcaccacagaccaacacaaccaaagatccatcaaaaccat 46  Q
    |||||| || ||||| |||||||||||||||||||||||||    
T  4869670 agcaccgcaaaccaaaacaaccaaagatccatcaaaaccat 4869710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 80 - 179
Target Start/End: Original strand, 53202387 - 53202487
Alignment:
Q  80 tcaccacctatgttgtgagcaaacataacctccaccacaaccaagagagaaaacgaatcaaatagttcgagaccca-gaaaaccaaacaaccaccgacaa 178  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||| |||||    
T  53202387 tcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacaaatcaaatagtttgagacccacgaaaaccaaacaaccacagacaa 53202486  T
Q  179 g 179  Q
    |    
T  53202487 g 53202487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 74 - 179
Target Start/End: Complemental strand, 23054241 - 23054135
Alignment:
Q  74 gatccatcaccacctatgttgtgagcaaacataacctccaccacaaccaagagagaaaacgaatcaaatagttcgagaccca-gaaaaccaaacaaccac 172  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||   ||||||| |||||||||||||||||    
T  23054241 gatccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacaaatcaaatagtctcagacccacgaaaaccaaacaaccac 23054142  T
Q  173 cgacaag 179  Q
     ||||||    
T  23054141 tgacaag 23054135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 74 - 179
Target Start/End: Complemental strand, 47518458 - 47518352
Alignment:
Q  74 gatccatcaccacctatgttgtgagcaaacataacctccaccacaaccaagagagaaaacgaatcaaatagttcgagaccca-gaaaaccaaacaaccac 172  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||| |||||||||||  |||||||| |||||||||||||||||    
T  47518458 gatccatcaccacctatgttgcgagcaaacataacctccaccacaacatagagagaaaacaaatcaaatagtctgagacccatgaaaaccaaacaaccac 47518359  T
Q  173 cgacaag 179  Q
    |||||||    
T  47518358 cgacaag 47518352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 131
Target Start/End: Original strand, 6410105 - 6410164
Alignment:
Q  73 cgatccatcaccacctatgttgtgagcaaacataacctcca-ccacaaccaagagagaaa 131  Q
    |||||||||||||||||| ||| |||||||||||||||||| |||| |||||||||||||    
T  6410105 cgatccatcaccacctattttgcgagcaaacataacctccatccaccaccaagagagaaa 6410164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 24957614 - 24957572
Alignment:
Q  73 cgatccatcaccacctatgttgtgagcaaacataacctccacc 115  Q
    |||| ||||||||||||||||| ||||||||||||||||||||    
T  24957614 cgatacatcaccacctatgttgcgagcaaacataacctccacc 24957572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 23054330 - 23054273
Alignment:
Q  6 agcaccacagaccaacacaaccaaagatccatcaaaaccataacaattcctaagcgaa 63  Q
    ||||||||  ||||||||||||||||||||||  ||||||||||| ||| ||||||||    
T  23054330 agcaccacgaaccaacacaaccaaagatccattgaaaccataacagttcataagcgaa 23054273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 34227112 - 34227074
Alignment:
Q  9 accacagaccaacacaaccaaagatccatcaaaaccata 47  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  34227112 accacagaccaacacaaccaaagatccattgaaaccata 34227074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 73 - 179
Target Start/End: Complemental strand, 7767013 - 7766906
Alignment:
Q  73 cgatccatcaccacctatgttgtgagcaaacataacctccaccacaaccaagagagaaaacgaatcaaatagttcgagaccca-gaaaaccaaacaacca 171  Q
    ||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||  |||||||| ||||||||||||||||    
T  7767013 cgatcaatcaccacctatgttgcgagcaaacataacctccatcacaaccaagagagaaaacaaatcaaatagtctgagacccacgaaaaccaaacaacca 7766914  T
Q  172 ccgacaag 179  Q
    ||| ||||    
T  7766913 ccggcaag 7766906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 41355617 - 41355483
Alignment:
Q  9 accacagaccaacacaaccaaagatccatcaaaaccataacaattcctaagcgaaacccagagacgatccatcaccacctatgttgtgagcaaacataac 108  Q
    |||||| ||||||||||||||||||||||| ||||||||  | ||| | |||||| |  ||| | ||||||||||| ||||||||| ||||||| |||||    
T  41355617 accacaaaccaacacaaccaaagatccatcgaaaccatataagttcatgagcgaa-catagatatgatccatcaccgcctatgttgcgagcaaatataac 41355519  T
Q  109 ctccaccacaaccaagagagaaaacgaatcaaatag 144  Q
    ||||||||||||||||||||||||| ||||||||||    
T  41355518 ctccaccacaaccaagagagaaaacaaatcaaatag 41355483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 78 - 179
Target Start/End: Original strand, 7271893 - 7271992
Alignment:
Q  78 catcaccacctatgttgtgagcaaacataacctccaccacaaccaagagagaaaacgaatcaaatagttcgagaccc-agaaaaccaaacaaccaccgac 176  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   || ||| | |||||||||||||||| |||    
T  7271893 catcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacgaatcaaatagt---agccccaataaaaccaaacaaccactgac 7271989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 73 - 171
Target Start/End: Complemental strand, 27170097 - 27169997
Alignment:
Q  73 cgatccatcaccacctatgttgtgagcaaacataacctccaccacaaccaagagag-aaaacgaatcaaatagttcgagaccca-gaaaaccaaacaacc 170  Q
    |||||||||||||| || |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||   |||||||| |||||||||||||||    
T  27170097 cgatccatcaccacttacgttgcgagcaaacataacctccaccacaaccaagagagaaaaacgaatcaaatagcctgagacccacgaaaaccaaacaacc 27169998  T
Q  171 a 171  Q
    |    
T  27169997 a 27169997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 183
Target Start/End: Original strand, 18697048 - 18697160
Alignment:
Q  74 gatccatcaccacctatgttgtgagcaaacataacctccac--cacaaccaagagagaaaacgaatcaaatagttcgagaccca-gaaaaccaaacaacc 170  Q
    ||||||||||||||||||||| | |||||||||||||||||  ||||||||| | | ||||| |||||||||||  |||||||| |||||||||||||||    
T  18697048 gatccatcaccacctatgttgcgggcaaacataacctccaccacacaaccaatataaaaaacaaatcaaatagtctgagacccacgaaaaccaaacaacc 18697147  T
Q  171 accgacaagtatc 183  Q
    |||||||| ||||    
T  18697148 accgacaattatc 18697160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 77 - 145
Target Start/End: Complemental strand, 6030391 - 6030323
Alignment:
Q  77 ccatcaccacctatgttgtgagcaaacataacctccaccacaaccaagagagaaaacgaatcaaatagt 145  Q
    |||||||||||||||||  || |||||||||| |||||| |||||||||||||||||||||||||||||    
T  6030391 ccatcaccacctatgttccgatcaaacataacatccaccgcaaccaagagagaaaacgaatcaaatagt 6030323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 26656827 - 26656895
Alignment:
Q  77 ccatcaccacctatgttgtgagcaaacataacctccaccacaaccaagagagaaaacgaatcaaatagt 145  Q
    |||||||||| ||| ||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  26656827 ccatcaccacttatattgcgagcaaacataaccttcacaacaaccaagagagaaaacgaatcaaatagt 26656895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 26928414 - 26928482
Alignment:
Q  77 ccatcaccacctatgttgtgagcaaacataacctccaccacaaccaagagagaaaacgaatcaaatagt 145  Q
    |||||||||| ||| ||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  26928414 ccatcaccacttatattgcgagcaaacataaccttcacaacaaccaagagagaaaacgaatcaaatagt 26928482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 6 - 87
Target Start/End: Complemental strand, 7767102 - 7767022
Alignment:
Q  6 agcaccacagaccaacacaaccaaagatccatcaaaaccataacaattcctaagcgaaacccagagacgatccatcaccacc 87  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||| |||| | |||| ||| | ||||||||||||||    
T  7767102 agcaccacaaaccaacacaaccaaagatccatcgaaaccataacaattcataagtg-aacctagatatgatccatcaccacc 7767022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 87
Target Start/End: Original strand, 18696958 - 18697038
Alignment:
Q  6 agcaccacagaccaacacaaccaaagatccatcaaaaccataacaattcctaagcgaaacccagagacgatccatcaccacc 87  Q
    ||||||||| ||||||||||||||||||||| | || |||||||| ||| |||||| |||| ||| | ||||||||||||||    
T  18696958 agcaccacaaaccaacacaaccaaagatccaccgaacccataacagttcataagcg-aacctagatatgatccatcaccacc 18697038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 27170186 - 27170133
Alignment:
Q  6 agcaccacagaccaacacaaccaaagatccatcaaaaccataacaattcctaag 59  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||| ||| ||||    
T  27170186 agcaccacaaaccaacacaaccaaagatccatcgaaaccataacagttcgtaag 27170133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 6030428 - 6030388
Alignment:
Q  6 agcaccacagaccaacacaaccaaagatccatcaaaaccat 46  Q
    ||||||||| ||||||||||||||||||||||| |||||||    
T  6030428 agcaccacaaaccaacacaaccaaagatccatcgaaaccat 6030388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 7271859 - 7271891
Alignment:
Q  6 agcaccacagaccaacacaaccaaagatccatc 38  Q
    ||||||||| |||||||||||||||||||||||    
T  7271859 agcaccacaaaccaacacaaccaaagatccatc 7271891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 75 - 168
Target Start/End: Original strand, 20740694 - 20740788
Alignment:
Q  75 atccatcaccacctatgttgtgagcaaacataacctccaccacaaccaagagagaaaacgaatcaaatagttcgagaccca-gaaaaccaaacaa 168  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||    
T  20740694 atccatcaccacctatgttgcgagcaaacataacatccaccacaaccaagagagaaaacaaatcaaatagtttgagacccacgaaaaccaaacaa 20740788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 21881581 - 21881688
Alignment:
Q  73 cgatccatcaccacctatgttgtgagcaaacataacctccaccacaaccaagagagaaaacgaatcaaatagttcgagaccca-gaaaaccaaacaacca 171  Q
    |||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||  |||| ||| |||||||||||||| |    
T  21881581 cgatccatcaccacctttgttgcgagcaaacataacctccgccacagccaagagagaaaacgaatcaaatagtctgagagccacgaaaaccaaacaacga 21881680  T
Q  172 ccgacaag 179  Q
    ||||||||    
T  21881681 ccgacaag 21881688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 30845582 - 30845626
Alignment:
Q  6 agcaccacagaccaacacaaccaaagatccatcaaaaccataaca 50  Q
    ||||||| | ||||||||||||||| || ||||||||||||||||    
T  30845582 agcaccataaaccaacacaaccaaaaattcatcaaaaccataaca 30845626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 73 - 173
Target Start/End: Original strand, 3302689 - 3302790
Alignment:
Q  73 cgatccatcaccacctatgttgtgagcaaacataacctccaccacaaccaagagagaaaacgaatcaaatagttcgagaccca-gaaaaccaaacaacca 171  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||  |||| ||| ||||||||||||||||    
T  3302689 cgatctatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagaggaaatgaatcaaatagtctgagatccacgaaaaccaaacaacca 3302788  T
Q  172 cc 173  Q
    ||    
T  3302789 cc 3302790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 3302600 - 3302657
Alignment:
Q  6 agcaccacagaccaacacaaccaaagatccatcaaaaccataacaattcctaagcgaa 63  Q
    ||||||||| ||||| ||||||||||||||||| |||| |||||| ||  ||||||||    
T  3302600 agcaccacataccaatacaaccaaagatccatcgaaactataacagttaataagcgaa 3302657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 76 - 179
Target Start/End: Original strand, 10408942 - 10409046
Alignment:
Q  76 tccatcaccacctatgttgtgagcaaacataacctccaccacaaccaagagagaaaacgaatcaaatagttcgagaccca-gaaaaccaaacaaccaccg 174  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||  |||||||||||| ||||||||  ||||||||| |||||||     
T  10408942 tccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagagaaaaaatcaaatagtttgagacccacaaaaaccaaataaccacca 10409041  T
Q  175 acaag 179  Q
    |||||    
T  10409042 acaag 10409046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 6 - 87
Target Start/End: Original strand, 5994655 - 5994735
Alignment:
Q  6 agcaccacagaccaacacaaccaaagatccatcaaaaccataacaattcctaagcgaaacccagagacgatccatcaccacc 87  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||| |||||||| | ||||||||||||||    
T  5994655 agcaccacaaaccaacacaaccaaagatccatcaaaaccataacagttcataagcg-aacccagatatgatccatcaccacc 5994735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 87 - 174
Target Start/End: Original strand, 5994757 - 5994846
Alignment:
Q  87 ctatgttgtgagcaaacataacctcca-ccacaaccaagagagaaaacgaatcaaatagttcgagaccca-gaaaaccaaacaaccaccg 174  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||| ||||||| |||| ||| |||| ||||||||||||| |||||    
T  5994757 ctatgttgcgagcaaacataacatccatccacaaccaagagagaaaacaaatcaaacagtttgaggcccacgaaaaccaaacaatcaccg 5994846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 6444151 - 6444208
Alignment:
Q  75 atccatcaccacctatgttgtgagcaaacataacctcca-ccacaaccaagagagaaa 131  Q
    |||||| |||||||| |||| |||||||||||||||||| ||||||||||||||||||    
T  6444151 atccataaccacctaagttgcgagcaaacataacctccatccacaaccaagagagaaa 6444208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 87
Target Start/End: Original strand, 10408850 - 10408930
Alignment:
Q  6 agcaccacagaccaacacaaccaaagatccatcaaaaccataacaattcctaagcgaaacccagagacgatccatcaccacc 87  Q
    ||||||||| |||||||||||||||||| |||| |||||||||||  || |||||| |||| ||| | ||||||||||||||    
T  10408850 agcaccacaaaccaacacaaccaaagattcatcgaaaccataacatatcataagcg-aacctagatatgatccatcaccacc 10408930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 18269803 - 18269763
Alignment:
Q  6 agcaccacagaccaacacaaccaaagatccatcaaaaccat 46  Q
    ||||||||| ||||||||||||||||||||||| |||||||    
T  18269803 agcaccacaaaccaacacaaccaaagatccatcgaaaccat 18269763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 135
Target Start/End: Complemental strand, 18269766 - 18269708
Alignment:
Q  77 ccatcaccacctatgttgtgagcaaacataacctccaccacaaccaagagagaaaacga 135  Q
    |||||||||||||||||  || || |||||||||||| || || |||||||||||||||    
T  18269766 ccatcaccacctatgtttcgatcagacataacctccatcataatcaagagagaaaacga 18269708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 43276004 - 43276048
Alignment:
Q  6 agcaccacagaccaacacaaccaaagatccatcaaaaccataaca 50  Q
    ||||||||| |||||||||||||||||| |||| ||| |||||||    
T  43276004 agcaccacaaaccaacacaaccaaagattcatcgaaatcataaca 43276048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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