View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21392_high_3 (Length: 463)
Name: NF21392_high_3
Description: NF21392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21392_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 145 - 362
Target Start/End: Original strand, 4065061 - 4065278
Alignment:
| Q |
145 |
tcatttaccttgaccatgttgttgaccctcagattctgaagtaccagaagaagaaccaattgaaccaccaccaccttgtggtgaaggaggaacaacttga |
244 |
Q |
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| T |
4065061 |
tcatttaccttgaccatgttgttgaccctcagattctgaagtacccgaagaagaaccaattgaaccaccaccaccttgtggtgaaggaggaacaacttga |
4065160 |
T |
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| Q |
245 |
tccaattccttttcaccattcaaaccaagtccaccaacacgagtagttaaagaactagttcttatcaaactttcaccaccaacaccttgcacaaaaacct |
344 |
Q |
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| T |
4065161 |
tccaattccttttcaccattcaaaccaagtccaccaacacgagtagttaaagaactagttcttatcaaactttcaccaccaacaccttgcacaaaaacct |
4065260 |
T |
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| Q |
345 |
ccactagattattactat |
362 |
Q |
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| T |
4065261 |
ccactagattattactat |
4065278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 4064916 - 4064998
Alignment:
| Q |
1 |
aaaattaaagtaaattatccacgattcttcaaggataacctagacctgacccgacttc-aaaaaacactaatttatcaacaac |
82 |
Q |
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| T |
4064916 |
aaaattaaagtaaattatccacgattcttcaaaaataacctagacctgactcgacttcaaaaaaacactaatttatcaacaac |
4064998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 4064835 - 4064908
Alignment:
| Q |
9 |
agtaaattatccacgattcttcaaggataacctagacctgacccgacttcaaaaaacactaatttatcaacaac |
82 |
Q |
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| T |
4064835 |
agtaaattatccacgattcttcaaggataacctcgacctgacccaacttaaagaaacactaattcatcaacaac |
4064908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 419 - 459
Target Start/End: Original strand, 4065329 - 4065369
Alignment:
| Q |
419 |
aaacttctttctctcatagccctagaatttctctgcttctc |
459 |
Q |
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| T |
4065329 |
aaacttctttctctcatagccctagaatttctctgcttctc |
4065369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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