View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21392_high_4 (Length: 413)
Name: NF21392_high_4
Description: NF21392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21392_high_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 2 - 413
Target Start/End: Complemental strand, 26496116 - 26495705
Alignment:
| Q |
2 |
catctctttgcaattgtacaaggcctaatgggaagattccttggtagatttaatgcacatttcaacattgtatcgaaggcaccagacgatgatggcgagt |
101 |
Q |
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| T |
26496116 |
catctctttgcaattgtacaaggcctaatgggaagattccttggtagatttaatgcacatttcaacattgtatcgaaggcaccagacgatgatggcgagt |
26496017 |
T |
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| Q |
102 |
ttaacgaactgtacaccattagatggacagtactactaatacctccaaccacagtgactatattcaacattatcggtattgttgctggtttcacagatgc |
201 |
Q |
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| T |
26496016 |
ttaacgaactgtacaccattagatggacagtactactaatacctccaaccacagtgactatattcaacattatcggtattgttgctggtttcacagatgc |
26495917 |
T |
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| Q |
202 |
tataaatagtggtgaacatgaatggggagcattgattgggaaactgttcttttcttcatgggttattgctcatctttatcctttccttaaaggactaatg |
301 |
Q |
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| T |
26495916 |
tataaatagtggtgaacatgaatggggagcattgattgggaaactgttcttttcttcatgggttattgctcatctttatcctttccttaaaggactaatg |
26495817 |
T |
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| Q |
302 |
ggaagacagaatagaacaccaactcttgttgtcatttggtctgtgcttttggcttctatcttttctttggtttgggtaagaatcgacccttttgtgttga |
401 |
Q |
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| T |
26495816 |
ggaagacagaatagaacaccaactcttgttgtcatttggtctgtgcttttggcttctatcttttctttggtttgggtaagaatcgacccttttgtgttga |
26495717 |
T |
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| Q |
402 |
aaactaaggggc |
413 |
Q |
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| T |
26495716 |
aaactaaggggc |
26495705 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 411
Target Start/End: Complemental strand, 54381057 - 54380973
Alignment:
| Q |
327 |
ttgttgtcatttggtctgtgcttttggcttctatcttttctttggtttgggtaagaatcgacccttttgtgttgaaaactaaggg |
411 |
Q |
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| T |
54381057 |
ttgttgtgatatggtcagtgttgttggcttccattttctctttgttatgggtaagaattgacccattcgtgatgaaaactaaggg |
54380973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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