View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21392_high_7 (Length: 360)

Name: NF21392_high_7
Description: NF21392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21392_high_7
NF21392_high_7
[»] chr2 (8 HSPs)
chr2 (210-357)||(25557788-25557936)
chr2 (17-120)||(25558449-25558552)
chr2 (123-212)||(25558086-25558173)
chr2 (210-289)||(4865477-4865555)
chr2 (232-310)||(37828446-37828523)
chr2 (253-310)||(4865682-4865739)
chr2 (253-310)||(29667569-29667626)
chr2 (210-281)||(34887855-34887924)
[»] chr7 (8 HSPs)
chr7 (210-310)||(1505543-1505643)
chr7 (222-310)||(23457411-23457499)
chr7 (222-310)||(23533269-23533357)
chr7 (210-310)||(23474929-23475029)
chr7 (244-310)||(23443335-23443401)
chr7 (253-309)||(2169266-2169322)
chr7 (242-310)||(23534133-23534201)
chr7 (262-311)||(25921030-25921081)
[»] chr5 (5 HSPs)
chr5 (210-310)||(17476169-17476268)
chr5 (232-299)||(7148294-7148360)
chr5 (232-310)||(38299728-38299804)
chr5 (235-310)||(38299874-38299953)
chr5 (264-312)||(41048646-41048694)
[»] chr1 (3 HSPs)
chr1 (222-312)||(27630998-27631088)
chr1 (254-312)||(51249165-51249223)
chr1 (222-310)||(42175252-42175340)
[»] chr3 (4 HSPs)
chr3 (210-311)||(30259605-30259706)
chr3 (253-307)||(30259865-30259919)
chr3 (253-301)||(38421258-38421306)
chr3 (224-280)||(52236576-52236632)
[»] chr6 (4 HSPs)
chr6 (213-309)||(34448430-34448526)
chr6 (210-310)||(1706803-1706903)
chr6 (255-312)||(5449483-5449541)
chr6 (254-311)||(4974690-4974747)
[»] chr4 (4 HSPs)
chr4 (210-289)||(53801506-53801585)
chr4 (210-310)||(12828554-12828655)
chr4 (249-310)||(52074897-52074958)
chr4 (222-289)||(26310235-26310300)
[»] chr8 (4 HSPs)
chr8 (253-310)||(13706217-13706274)
chr8 (223-310)||(1410698-1410783)
chr8 (270-310)||(1410470-1410510)
chr8 (231-310)||(29795754-29795833)


Alignment Details
Target: chr2 (Bit Score: 113; Significance: 4e-57; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 210 - 357
Target Start/End: Complemental strand, 25557936 - 25557788
Alignment:
Q  210 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacg-ttttttattgggagaagaacaattt 308  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||| |||| |||||| ||||||    
T  25557936 gttatacttcatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttgtatgggagtgagcgtttttttgttggaagaagagcaattt 25557837  T
Q  309 tcaatatgagtatatactactcgcattgccatatttgggtcacaggttc 357  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||    
T  25557836 ttaatatgagtatatactactcgcattgccatatttgggtcacaggttc 25557788  T

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Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 25558552 - 25558449
Alignment:
Q  17 acctgtgttgtgaaatagggatttaagagttgtgttttgtttttaacaggttgtgtaatgggcttattgggcttagtttaaaacttttactatcagcctt 116  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  25558552 acctgtgttgtgaaatagggatttaggagttgtgttttgtttttaacaggttgtgtaatgggcttattaggcttagtttaaaacttttactaccagcctt 25558453  T
Q  117 acat 120  Q
    ||||    
T  25558452 acat 25558449  T

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Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 123 - 212
Target Start/End: Complemental strand, 25558173 - 25558086
Alignment:
Q  123 taattgctaaaatggatataattttgctcttttttcttaattaaaattacctatttgtgttttaggggatttaattacctatttgttgtt 212  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  25558173 taattgctaaaatggatctaattttgctcttttttcttaattaa--ttacctatttgtgttttaggggatttaattacctatttgttgtt 25558086  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 289
Target Start/End: Complemental strand, 4865555 - 4865477
Alignment:
Q  210 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgtttttt 289  Q
    ||||||||| | |||||| || |||||||||| ||||||||| |||||||||| ||||| |||| |||||||||||||||    
T  4865555 gttatacttcagcttaccaaacgtgagttaactcacgtgggg-gtattttggtaagtttgtatgagagtgaacgtttttt 4865477  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 310
Target Start/End: Complemental strand, 37828523 - 37828446
Alignment:
Q  232 gtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 310  Q
    |||||||||| |||| | || |||||||||||||||| |||| |||||| |||||||| ||||||||||| ||||||||    
T  37828523 gtgagttaactcacgcgagg-gtattttggtcagtttgtatgtgagtgatcgttttttgttgggagaagagcaattttc 37828446  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 4865682 - 4865739
Alignment:
Q  253 gtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 310  Q
    |||||||||||||||| ||||||||||||| |||||| ||||||| ||| ||||||||    
T  4865682 gtattttggtcagtttgtatgggagtgaacattttttgttgggaggagagcaattttc 4865739  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 29667626 - 29667569
Alignment:
Q  253 gtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 310  Q
    ||||||| || ||||| |||||||||||||| ||||||||||| ||||| || |||||    
T  29667626 gtatttttgttagtttgtatgggagtgaacgatttttattgggtgaagagcagttttc 29667569  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 281
Target Start/End: Complemental strand, 34887924 - 34887855
Alignment:
Q  210 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaa 281  Q
    ||||||||| | |||| |||| |||| ||||| |||||||||  ||||||||| ||||| ||||||||||||    
T  34887924 gttatacttcagcttatcgaacgtgaattaactcacgtgggg--tattttggttagtttgtatgggagtgaa 34887855  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 210 - 310
Target Start/End: Complemental strand, 1505643 - 1505543
Alignment:
Q  210 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatttt 309  Q
    ||||||||| | |||| ||||||||||||||| ||| ||| | ||||||||||| |||||||||||||| |||||||||| ||||||||||| |||||||    
T  1505643 gttatacttcagcttatcgaatgtgagttaactcacatggagggtattttggtcggtttatatgggagtaaacgttttttgttgggagaagagcaatttt 1505544  T
Q  310 c 310  Q
    |    
T  1505543 c 1505543  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 222 - 310
Target Start/End: Original strand, 23457411 - 23457499
Alignment:
Q  222 cttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 310  Q
    |||||| ||||||||||||| |||||||   |||||||||| ||||| ||||||||||| |||||||| || |||||||||||||||||    
T  23457411 cttaccaaatgtgagttaactcacgtggaaggtattttggtaagtttttatgggagtgagcgttttttgtttggagaagaacaattttc 23457499  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 23533357 - 23533269
Alignment:
Q  222 cttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 310  Q
    |||||| || |||||||||| ||||||| | |||||||||| ||||| ||||||||||| | |||||| ||||||||||||||||||||    
T  23533357 cttaccaaacgtgagttaactcacgtggtgggtattttggtaagtttttatgggagtgagcattttttgttgggagaagaacaattttc 23533269  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 310
Target Start/End: Complemental strand, 23475029 - 23474929
Alignment:
Q  210 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatttt 309  Q
    ||||||||| | |||||| || |||||||||| ||| ||| | |||||||||| | ||| |||||||| || |||||||| |||||||||||||||||||    
T  23475029 gttatacttcaacttaccaaacgtgagttaactcacatggagggtattttggtaaatttttatgggagagagcgttttttgttgggagaagaacaatttt 23474930  T
Q  310 c 310  Q
    |    
T  23474929 c 23474929  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 310
Target Start/End: Complemental strand, 23443401 - 23443335
Alignment:
Q  244 acgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 310  Q
    |||||| | |||||||| | ||||| ||||||||||| |||||||| ||||||||||||||||||||    
T  23443401 acgtggagggtattttgataagtttttatgggagtgagcgttttttgttgggagaagaacaattttc 23443335  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 309
Target Start/End: Original strand, 2169266 - 2169322
Alignment:
Q  253 gtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatttt 309  Q
    |||||||| || |||| ||||||||||| |||||||| ||||||||||| |||||||    
T  2169266 gtattttgatcggtttgtatgggagtgagcgttttttgttgggagaagagcaatttt 2169322  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 310
Target Start/End: Original strand, 23534133 - 23534201
Alignment:
Q  242 acacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 310  Q
    |||||||| | ||||||| || ||||| |||| |||||| | |||||| ||||||||||| ||||||||    
T  23534133 acacgtggcgggtatttttgttagtttgtatgagagtgagcattttttgttgggagaagagcaattttc 23534201  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 311
Target Start/End: Complemental strand, 25921081 - 25921030
Alignment:
Q  262 tcagtttatatgggagtgaacgtt--ttttattgggagaagaacaattttca 311  Q
    ||||||| ||||||||||||||||  |||| ||||| |||||||||||||||    
T  25921081 tcagtttgtatgggagtgaacgttttttttgttgggtgaagaacaattttca 25921030  T

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Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 210 - 310
Target Start/End: Original strand, 17476169 - 17476268
Alignment:
Q  210 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatttt 309  Q
    ||||||||||| ||||||||| | |||||||| ||||||| | |||||||||||||||| |||| ||| ||||||||||| |||||||||||||||||||    
T  17476169 gttatactttagcttaccgaacgcgagttaactcacgtggag-gtattttggtcagtttgtatgagagcgaacgttttttgttgggagaagaacaatttt 17476267  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 299
Target Start/End: Complemental strand, 7148360 - 7148294
Alignment:
Q  232 gtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaa 299  Q
    |||||||||| ||||| |||||||||||||||||||| ||||||||||| | |||||| |||||||||    
T  7148360 gtgagttaactcacgtagggagtattttggtcagtttgtatgggagtgagc-ttttttgttgggagaa 7148294  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 310
Target Start/End: Complemental strand, 38299804 - 38299728
Alignment:
Q  232 gtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 310  Q
    |||||||||| |||| ||| |||||||| |||||||| ||||||||||||||| |||| ||||||||||| ||||||||    
T  38299804 gtgagttaactcacgcggg-agtattttagtcagtttgtatgggagtgaacgtctttt-ttgggagaagagcaattttc 38299728  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 310
Target Start/End: Original strand, 38299874 - 38299953
Alignment:
Q  235 agttaacacacgtggggagtattttggtcagttta-----tatgggagtgaacgttttttattgggagaagaacaattttc 310  Q
    ||||||| ||||||||  |||||||||||||||||     |||| |||||| |||||||| ||||||||||| ||||||||    
T  38299874 agttaactcacgtgggc-gtattttggtcagtttaatttgtatgtgagtgagcgttttttgttgggagaagagcaattttc 38299953  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 41048694 - 41048646
Alignment:
Q  264 agtttatatgggagtgaacgttttttattgggagaagaacaattttcaa 312  Q
    ||||| ||||||||||  |||||||| ||||||||||| ||||||||||    
T  41048694 agtttgtatgggagtgtgcgttttttgttgggagaagagcaattttcaa 41048646  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 222 - 312
Target Start/End: Complemental strand, 27631088 - 27630998
Alignment:
Q  222 cttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttcaa 312  Q
    ||||||||| |||||||||| ||||||||  || |||| |||||||||||||||||||| |||||||| ||||||||||| | ||||||||    
T  27631088 cttaccgaacgtgagttaactcacgtgggatgtgttttagtcagtttatatgggagtgagcgttttttgttgggagaagagctattttcaa 27630998  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 312
Target Start/End: Complemental strand, 51249223 - 51249165
Alignment:
Q  254 tattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttcaa 312  Q
    |||||| ||||||||||||| ||||| |||| |||| ||||||||||| ||||||||||    
T  51249223 tattttagtcagtttatatgagagtgcacgtcttttgttgggagaagagcaattttcaa 51249165  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 310
Target Start/End: Original strand, 42175252 - 42175340
Alignment:
Q  222 cttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 310  Q
    ||||||||  |||||||||| ||||||| |  ||||| | || |||| |||||||||||  ||||||| ||||||||||| ||||||||    
T  42175252 cttaccgagcgtgagttaactcacgtggaggatatttcgatcggtttgtatgggagtgagtgttttttgttgggagaagagcaattttc 42175340  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 210 - 311
Target Start/End: Complemental strand, 30259706 - 30259605
Alignment:
Q  210 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatttt 309  Q
    ||||||||| |||| |||||| |||||||||| ||||||  |||||||||||||||||| ||||  ||||| |||||||| ||||| ||||  |||||||    
T  30259706 gttatacttcatctgaccgaacgtgagttaactcacgtgacgagtattttggtcagtttgtatgaaagtgatcgttttttgttgggtgaagcgcaatttt 30259607  T
Q  310 ca 311  Q
    ||    
T  30259606 ca 30259605  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 30259865 - 30259919
Alignment:
Q  253 gtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatt 307  Q
    |||||||| ||||||| ||||||||||| |||||||| ||||||||||| |||||    
T  30259865 gtattttgatcagtttgtatgggagtgagcgttttttgttgggagaagagcaatt 30259919  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 301
Target Start/End: Complemental strand, 38421306 - 38421258
Alignment:
Q  253 gtattttggtcagtttatatgggagtgaacgttttttattgggagaaga 301  Q
    |||||||| ||||||||||||||||| | |||||||| | |||||||||    
T  38421306 gtattttgatcagtttatatgggagtaagcgttttttgtcgggagaaga 38421258  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 52236576 - 52236632
Alignment:
Q  224 taccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtga 280  Q
    |||||||||||||||||| ||  | | ||||||||||||||||| || |||||||||    
T  52236576 taccgaatgtgagttaactcaaattgagagtattttggtcagttcatgtgggagtga 52236632  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 213 - 309
Target Start/End: Original strand, 34448430 - 34448526
Alignment:
Q  213 atactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatttt 309  Q
    |||||| | |||||| || ||||| |||||||||||||| |||||||||||||||| |||||| ||||  ||||||| || |||||||| |||||||    
T  34448430 atacttcagcttaccaaacgtgagctaacacacgtggggggtattttggtcagtttgtatgggcgtgagtgttttttgtttggagaagagcaatttt 34448526  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 310
Target Start/End: Original strand, 1706803 - 1706903
Alignment:
Q  210 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaatttt 309  Q
    ||||||||| | |||||||||  ||||||||| ||||||| | ||| |||| |||||||||||| |||||||  |||||| ||||||||||| || ||||    
T  1706803 gttatacttcaacttaccgaacatgagttaactcacgtggagggtactttgatcagtttatatgagagtgaatcttttttgttgggagaagagcagtttt 1706902  T
Q  310 c 310  Q
    |    
T  1706903 c 1706903  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 5449541 - 5449483
Alignment:
Q  255 attttggtcagtttatatgggagtgaacg-ttttttattgggagaagaacaattttcaa 312  Q
    |||||||||||||| |||||||||||||| |||||| || |||||||| ||||||||||    
T  5449541 attttggtcagtttgtatgggagtgaacgcttttttgtttggagaagagcaattttcaa 5449483  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 311
Target Start/End: Complemental strand, 4974747 - 4974690
Alignment:
Q  254 tattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttca 311  Q
    ||||||||||||||| ||||| ||||| |||||||| ||  ||||||| |||||||||    
T  4974747 tattttggtcagtttgtatggaagtgagcgttttttgttaagagaagagcaattttca 4974690  T

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Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 210 - 289
Target Start/End: Original strand, 53801506 - 53801585
Alignment:
Q  210 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgtttttt 289  Q
    ||||||||| | |||| |||| |||||||||| ||||||| |||||||||||||||||| | || |||||||||||||||    
T  53801506 gttatacttcagcttatcgaacgtgagttaactcacgtggagagtattttggtcagtttgtttgagagtgaacgtttttt 53801585  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 210 - 310
Target Start/End: Original strand, 12828554 - 12828655
Alignment:
Q  210 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgtttttt-attgggagaagaacaattt 308  Q
    ||||||||| ||||||||||| |||||||||| |||||| |   ||||||||||||||| |||| |||||||| ||||||  |||||||||||  |||||    
T  12828554 gttatacttcatcttaccgaacgtgagttaactcacgtgagagatattttggtcagtttgtatgagagtgaacattttttggttgggagaagagaaattt 12828653  T
Q  309 tc 310  Q
    ||    
T  12828654 tc 12828655  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 310
Target Start/End: Original strand, 52074897 - 52074958
Alignment:
Q  249 gggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 310  Q
    ||||||||||||||| || ||||||| ||||| ||||||||| || ||||||| ||||||||    
T  52074897 gggagtattttggtcggtctatatggaagtgagcgttttttactgagagaagagcaattttc 52074958  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 26310300 - 26310235
Alignment:
Q  222 cttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgtttttt 289  Q
    ||||| |||||||||||||  ||  || ||||||||||||||||||| ||||||||||| | ||||||    
T  26310300 cttactgaatgtgagttaattca--tgcggagtattttggtcagtttgtatgggagtgagcatttttt 26310235  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 13706217 - 13706274
Alignment:
Q  253 gtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 310  Q
    |||||||||| ||||| ||||||||||||||||||||| ||| |||||| ||||||||    
T  13706217 gtattttggttagtttgtatgggagtgaacgttttttaatggtagaagagcaattttc 13706274  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 310
Target Start/End: Original strand, 1410698 - 1410783
Alignment:
Q  223 ttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttttttattgggagaagaacaattttc 310  Q
    ||||||||  ||||||||| ||||||| | |||||||| | ||||||||||| |||||  ||||||| ||||||||||| ||||||||    
T  1410698 ttaccgaacatgagttaactcacgtggag-gtattttgattagtttatatggcagtgagtgtttttt-ttgggagaagagcaattttc 1410783  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 1410510 - 1410470
Alignment:
Q  270 tatgggagtgaacgttttttattgggagaagaacaattttc 310  Q
    ||||| |||||||||||||| |||| |||||||||||||||    
T  1410510 tatggaagtgaacgttttttgttggaagaagaacaattttc 1410470  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 310
Target Start/End: Complemental strand, 29795833 - 29795754
Alignment:
Q  231 tgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacg-ttttttattgggagaagaacaattttc 310  Q
    ||||||||||| |||| || | |||||||||||||||| |||| |||| |||| |||||| ||| ||||||| ||||||||    
T  29795833 tgtgagttaactcacgcggag-gtattttggtcagtttgtatgagagtaaacgtttttttgttgagagaagagcaattttc 29795754  T

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