View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21392_high_9 (Length: 355)
Name: NF21392_high_9
Description: NF21392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21392_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 7e-71; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 13 - 173
Target Start/End: Original strand, 28916613 - 28916773
Alignment:
| Q |
13 |
cagattaccatcttctttttgttggggtcaaaaagctggnnnnnnnggcagtacttatggatgatcgaagcaacatcaatttcggaaaaagctttggtcg |
112 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28916613 |
cagattaccatcttctttttcttggggtcaaaaagctggtttttttggcagtacttatggatgatcgaagcaacatcaatttcggaaaaagctttggtcg |
28916712 |
T |
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| Q |
113 |
tgtcttcaccaatatttttaagaaaatctatgagacttcttgaaccccatccaacaaaatc |
173 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28916713 |
tgtcttcaccaatatttttaagaaaatctatgagacttcttgaaccccatccaacaaaatc |
28916773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 11 - 173
Target Start/End: Original strand, 28892245 - 28892407
Alignment:
| Q |
11 |
cacagattaccatcttctttttgttggggtcaaaaagctggnnnnnnnggcagtacttatggatgatcgaagcaacatcaatttcggaaaaagctttggt |
110 |
Q |
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||||||||||| |||||||||| |||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
28892245 |
cacagattaccttcttctttttcttggggtcaaaaagctggtttttgtggcagtacttactgatgattgaagcaacatcaatttcggaaaaagctttggt |
28892344 |
T |
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| Q |
111 |
cgtgtcttcaccaatatttttaagaaaatctatgagacttcttgaaccccatccaacaaaatc |
173 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28892345 |
cgtgtcttcaccaatatttttaagaaaatctacgagacttcttgaaccccatccaacaaaatc |
28892407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 236 - 351
Target Start/End: Original strand, 28916836 - 28916948
Alignment:
| Q |
236 |
ctggtttaactcttgacgtgccaaccaagtcgtcagaatcagaacctataaagtcacttgcatcagattcaccggtatcatcttccccctcacctctttc |
335 |
Q |
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| T |
28916836 |
ctggtttaactcttgacgtgccaaccaagtcgtcagaatcagaacctataaagtcacttgcatcagattcaccggt---atcttccccctcacctctttc |
28916932 |
T |
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| Q |
336 |
atacggttccaagtca |
351 |
Q |
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|||||||||||||||| |
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| T |
28916933 |
atacggttccaagtca |
28916948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 22 - 173
Target Start/End: Original strand, 28925848 - 28925999
Alignment:
| Q |
22 |
atcttctttttgttggggtcaaaaagctggnnnnnnnggcagtacttatggatgatcgaagcaacatcaatttcggaaaaagctttggtcgtgtcttcac |
121 |
Q |
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||||||||||| |||||||||||||||||| ||||||| | || || |||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
28925848 |
atcttctttttcttggggtcaaaaagctggtgtttgtggcagtaatcattgacgatcgaagcaacttcaatttcggaaaaagctttggtcgtgtctctac |
28925947 |
T |
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| Q |
122 |
caatatttttaagaaaatctatgagacttcttgaaccccatccaacaaaatc |
173 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
28925948 |
caatatttttaagaaaatctatgagacttcttgaaccccatcctacaaaatc |
28925999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 11 - 173
Target Start/End: Original strand, 28902199 - 28902361
Alignment:
| Q |
11 |
cacagattaccatcttctttttgttggggtcaaaaagctggnnnnnnnggcagtacttatggatgatcgaagcaacatcaatttcggaaaaagctttggt |
110 |
Q |
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|||| ||||| ||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||||||||| ||| || || |||| || |
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| T |
28902199 |
cacaaattacgatcttctttttcttggggtcaaaaagctggtttgtgtggcagtactggatgatgatccaagcaacatcaagttcagacaacgcttcagt |
28902298 |
T |
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| Q |
111 |
cgtgtcttcaccaatatttttaagaaaatctatgagacttcttgaaccccatccaacaaaatc |
173 |
Q |
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||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28902299 |
cgtgtctctaccaatacttttaagaaaatctatgagacttcttgaaccccatccaacaaaatc |
28902361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 240 - 330
Target Start/End: Original strand, 28902437 - 28902527
Alignment:
| Q |
240 |
tttaactcttgacgtgccaaccaagtcgtcagaatcagaacctataaagtcacttgcatcagattcaccggtatcatcttccccctcacct |
330 |
Q |
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||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| |
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| T |
28902437 |
tttaactcttgacgtgccaaccaagtcatcacaatcagaacctataaagtcactcgcatcagattcaccagtatcgtcttccccctcacct |
28902527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 240 - 351
Target Start/End: Original strand, 28926072 - 28926183
Alignment:
| Q |
240 |
tttaactcttgacgtgccaaccaagtcgtcagaatcagaacctataaagtcacttgcatcagattcaccggtatcatcttccccctcacctctttcatac |
339 |
Q |
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||||||||||||||| || | ||||||||| ||||||| |||||||||| || ||||||| ||||| ||||||||||||||||||||| |||||||| |
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| T |
28926072 |
tttaactcttgacgtttcatcgaagtcgtcacaatcagatcctataaagttgctcacatcagaatcaccagtatcatcttccccctcacctatttcatac |
28926171 |
T |
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| Q |
340 |
ggttccaagtca |
351 |
Q |
| |
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|| ||||||||| |
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| T |
28926172 |
ggatccaagtca |
28926183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 170
Target Start/End: Original strand, 28935507 - 28935601
Alignment:
| Q |
76 |
atcgaagcaacatcaatttcggaaaaagctttggtcgtgtcttcaccaatatttttaagaaaatctatgagacttcttgaaccccatccaacaaa |
170 |
Q |
| |
|
||||||||||||||| ||| | ||| ||||| | ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28935507 |
atcgaagcaacatcatgttccgtaaatgcttttgccgtgtctctaccaatatctttaagaaaatctatgagacttcttgaaccccatccaacaaa |
28935601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 272 - 338
Target Start/End: Original strand, 28892515 - 28892581
Alignment:
| Q |
272 |
aatcagaacctataaagtcacttgcatcagattcaccggtatcatcttccccctcacctctttcata |
338 |
Q |
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|
|||||||| |||| |||| ||| ||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
28892515 |
aatcagaatctatgaagttactgacatcagactcaccggtatcatcttccccctcacctatttcata |
28892581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 320
Target Start/End: Original strand, 28935692 - 28935748
Alignment:
| Q |
264 |
gtcgtcagaatcagaacctataaagtcacttgcatcagattcaccggtatcatcttc |
320 |
Q |
| |
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||||||| |||||||||||||||||| ||| ||||||| ||||| | ||||||||| |
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|
| T |
28935692 |
gtcgtcacaatcagaacctataaagtaactcacatcagagtcaccagcatcatcttc |
28935748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 281 - 351
Target Start/End: Original strand, 34009511 - 34009581
Alignment:
| Q |
281 |
ctataaagtcacttgcatcagattcaccggtatcatcttccccctcacctctttcatacggttccaagtca |
351 |
Q |
| |
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||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||| || ||||||||| |
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| T |
34009511 |
ctataaagtcactcacatcagattcaccagtatcatcttccccctcacctacttcatatggatccaagtca |
34009581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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