View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21392_low_1 (Length: 252)

Name: NF21392_low_1
Description: NF21392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21392_low_1
NF21392_low_1
[»] chr6 (31 HSPs)
chr6 (19-120)||(5398252-5398353)
chr6 (23-104)||(5156017-5156098)
chr6 (19-108)||(5177945-5178034)
chr6 (19-108)||(5279770-5279859)
chr6 (23-104)||(5372307-5372388)
chr6 (19-108)||(5688903-5688992)
chr6 (26-108)||(2939128-2939210)
chr6 (19-108)||(5242512-5242601)
chr6 (24-108)||(23127310-23127394)
chr6 (19-108)||(5346235-5346324)
chr6 (19-108)||(5439217-5439306)
chr6 (19-108)||(5098417-5098506)
chr6 (22-108)||(5180774-5180860)
chr6 (19-108)||(5351606-5351695)
chr6 (23-85)||(5334395-5334457)
chr6 (19-104)||(5100822-5100907)
chr6 (19-104)||(5135923-5136008)
chr6 (19-108)||(5256114-5256203)
chr6 (19-108)||(5427106-5427195)
chr6 (19-108)||(5283224-5283313)
chr6 (19-108)||(5126629-5126718)
chr6 (19-108)||(5448815-5448904)
chr6 (49-104)||(2657155-2657210)
chr6 (19-98)||(5072692-5072771)
chr6 (19-108)||(5065449-5065538)
chr6 (165-229)||(5352615-5352677)
chr6 (19-108)||(5352863-5352952)
chr6 (19-107)||(5253739-5253827)
chr6 (215-246)||(5255890-5255921)
chr6 (215-246)||(5334562-5334593)
chr6 (19-108)||(5124443-5124532)
[»] chr3 (4 HSPs)
chr3 (19-108)||(47985393-47985482)
chr3 (19-108)||(48003967-48004056)
chr3 (19-108)||(47994680-47994769)
chr3 (19-108)||(48013252-48013341)
[»] chr7 (1 HSPs)
chr7 (19-87)||(36212942-36213010)
[»] chr4 (2 HSPs)
chr4 (19-63)||(25569046-25569090)
chr4 (64-108)||(7884155-7884199)
[»] scaffold1476 (1 HSPs)
scaffold1476 (19-77)||(48-106)
[»] chr2 (1 HSPs)
chr2 (19-77)||(22583333-22583391)


Alignment Details
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 5398252 - 5398353
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgatttgaatacaa 118  Q
    ||||||||||||||||||||||| ||||||   |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5398252 agtatagaacctggtaacaaagttgaggttgtctttgttttcgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgatttgaatgcaa 5398351  T
Q  119 tt 120  Q
    ||    
T  5398352 tt 5398353  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 5156098 - 5156017
Alignment:
Q  23 tagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtata 104  Q
    ||||||||||||||||||||||||| ||||||||||| |||| | |||||||||||||||||||||||||||||||||||||    
T  5156098 tagaacctggtaacaaagtggaggtccattttgttttcgagattaatttcattgtgaagaagacaacagtttatcttgtata 5156017  T

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Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 5177945 - 5178034
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    |||||||||||| |||||||||||||||||  | ||||||||||||| | ||||||||||||||| |||||||||||||| |||||||||    
T  5177945 agtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtatatgat 5178034  T

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Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 5279770 - 5279859
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    |||||||||||| |||||||||||||||||  | ||||||||||||| | ||||||||||||||| |||||||||||||| |||||||||    
T  5279770 agtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtatatgat 5279859  T

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Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 5372307 - 5372388
Alignment:
Q  23 tagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtata 104  Q
    ||||||||||||||||||||||| | ||||||||| | |||||||||||||||||||||||||||||| ||||||| |||||    
T  5372307 tagaacctggtaacaaagtggagatccattttgttctcgagaatgatttcattgtgaagaagacaacaatttatctcgtata 5372388  T

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Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 5688992 - 5688903
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    |||||||||||| |||||||||||||||||  || |||||||||||| | ||||||||||||||| |||||||||||||| |||||||||    
T  5688992 agtatagaaccttgtaacaaagtggaggttgtttctgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtatatgat 5688903  T

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Target: chr6; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 2939128 - 2939210
Alignment:
Q  26 aacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    |||||||||||||||||||||| ||||||||| | |||||||||| ||||||||||||| ||||| ||||||| |||||||||    
T  2939128 aacctggtaacaaagtggaggtccattttgttatcgagaatgattgcattgtgaagaaggcaacaatttatctcgtatatgat 2939210  T

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Target: chr6; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 5242601 - 5242512
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    |||||||||||||||||||||||||||||   |||||||||||||||   |||||||||||||||||||  ||||||||| |||||||||    
T  5242601 agtatagaacctggtaacaaagtggaggtcgtttttgtttttgagaacagtttcattgtgaagaagacagtagtttatctcgtatatgat 5242512  T

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Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 23127394 - 23127310
Alignment:
Q  24 agaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    |||||||||||||||| ||||||||  | | ||||||||||||| |||| |||||||||| ||||||||||||||||||||||||    
T  23127394 agaacctggtaacaaaatggaggttgttgtcgtttttgagaatggtttcgttgtgaagaatacaacagtttatcttgtatatgat 23127310  T

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Target: chr6; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 5346235 - 5346324
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    ||||||||||||||||||||||||||||||    ||||| ||||||||| ||||||||||||||||||| || |||||||  ||||||||    
T  5346235 agtatagaacctggtaacaaagtggaggttgtcgttgttattgagaatggtttcattgtgaagaagacagcaatttatctcatatatgat 5346324  T

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Target: chr6; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 5439217 - 5439306
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    ||||||||||||||||||||||||||||||  |||||||||  |||||||||||||||  || |||||| ||| |||||| |||||||||    
T  5439217 agtatagaacctggtaacaaagtggaggttgtttttgttttcaagaatgatttcattgccaaaaagacagcagcttatctcgtatatgat 5439306  T

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Target: chr6; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 5098417 - 5098506
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcatt-ttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    |||||||||||||||||||||||||||| ||||| ||||||| |||||   |||||||||||| |||||| |||||||||| |||||||||    
T  5098417 agtatagaacctggtaacaaagtggagg-tcattgttgttttcgagaacagtttcattgtgaaaaagacagcagtttatctggtatatgat 5098506  T

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Target: chr6; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 5180860 - 5180774
Alignment:
Q  22 atagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    |||||||| |||||||||||||||||   |||||||||||||||   ||||||||||||||||||| || ||||||| |||||||||    
T  5180860 atagaacccggtaacaaagtggaggtcgtttttgtttttgagaaaagtttcattgtgaagaagacagcaatttatctggtatatgat 5180774  T

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Target: chr6; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 5351606 - 5351695
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    |||||||||||  ||||||||||||||||   ||||||||| |||||||||| ||||||||| ||||||  ||||||||| |||||||||    
T  5351606 agtatagaacccagtaacaaagtggaggtcatttttgttttcgagaatgattgcattgtgaaaaagacagtagtttatctcgtatatgat 5351695  T

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Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 5334395 - 5334457
Alignment:
Q  23 tagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaaga 85  Q
    |||||||||||||||||||||||||   ||||||||| ||||||||||||||| |||||||||    
T  5334395 tagaacctggtaacaaagtggaggtcgtttttgttttcgagaatgatttcattttgaagaaga 5334457  T

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Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 5100907 - 5100822
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtata 104  Q
    ||||||||||| |||||||||||||||||   | |||||||||||||   |||||||||||| |||||| |||||||||| |||||    
T  5100907 agtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtata 5100822  T

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Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 5136008 - 5135923
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtata 104  Q
    ||||||||||| |||||||||||||||||   | |||||||||||||   |||||||||||| |||||| |||||||||| |||||    
T  5136008 agtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtata 5135923  T

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Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 5256203 - 5256114
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    ||||| ||||| |||||||||||||||||    ||||||||  |||||||||||||||||||||||||| || ||||| | |||||||||    
T  5256203 agtattgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaatttatttggtatatgat 5256114  T

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Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 5427106 - 5427195
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    ||||||||||||||||||||| |||||||   |||||||||||||||   |||| |||||| |||||||  ||||||||| |||||||||    
T  5427106 agtatagaacctggtaacaaaatggaggtcgtttttgtttttgagaacagtttcgttgtgacgaagacagtagtttatctcgtatatgat 5427195  T

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Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 5283313 - 5283224
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcat-tttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    ||||| ||||| ||||||||||||||||| ||| ||||||||||| ||   ||||||||||||||||||| || ||||||| |||||||||    
T  5283313 agtatcgaaccaggtaacaaagtggaggt-catatttgtttttgaaaacagtttcattgtgaagaagacagcaatttatctggtatatgat 5283224  T

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Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 5126718 - 5126629
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    ||||||||| ||||||||||||| ||| ||  | |||||||| |||| | ||||||||||||||||||| | ||||||||  ||||||||    
T  5126718 agtatagaagctggtaacaaagttgagattgttgttgtttttaagaacggtttcattgtgaagaagacagctgtttatctcatatatgat 5126629  T

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Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 5448815 - 5448904
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    ||||||||||| || |||||||||||| |   ||||||||| ||||||||||||| |||| ||||||||  ||| ||||| |||||||||    
T  5448815 agtatagaacccggaaacaaagtggagatcgtttttgttttcgagaatgatttcactgtggagaagacagtagtatatctggtatatgat 5448904  T

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Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 2657210 - 2657155
Alignment:
Q  49 cattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtata 104  Q
    |||||||| || |||||||||||||||||||||||| ||||| ||||||| |||||    
T  2657210 cattttgtattcgagaatgatttcattgtgaagaaggcaacaatttatctcgtata 2657155  T

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Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 5072771 - 5072692
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatct 98  Q
    |||||||| ||||||||| |||||||||||    ||||| ||||||| |||||||||||||| ||||||| | |||||||    
T  5072771 agtatagagcctggtaaccaagtggaggttgtcgttgttgttgagaacgatttcattgtgaaaaagacaataatttatct 5072692  T

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Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 5065538 - 5065449
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    ||||| |||||||| || ||||||||  ||  | ||||||||||||| | |||| ||||||||| |||||||||||||||  ||||||||    
T  5065538 agtattgaacctggaaataaagtggattttgttgttgtttttgagaacggtttcgttgtgaagaggacaacagtttatctcatatatgat 5065449  T

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Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 5352615 - 5352677
Alignment:
Q  165 aaaaactgtaatctcgcttctcattaggattgaaataaaatcaccacagttaaaatctagaaact 229  Q
    ||||| |||||||||||||||| | |||||||||  |||| |||||||| |||||||||||||||    
T  5352615 aaaaattgtaatctcgcttctcttaaggattgaa--aaaaccaccacagataaaatctagaaact 5352677  T

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Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 5352952 - 5352863
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    ||||| || |||||| ||||||| |||||   | ||||||| ||||||  |||||| ||||||||||||||| ||||||| |||||||||    
T  5352952 agtatggatcctggtgacaaagtagaggtggttattgttttcgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgat 5352863  T

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Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 5253739 - 5253827
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatga 107  Q
    ||||| |||||||| || ||||||||| ||  | |||||||||||||   |||||||||||||| ||| |||||||||||  |||||||    
T  5253739 agtattgaacctggaaataaagtggagtttgttgttgtttttgagaacagtttcattgtgaagaggacgacagtttatctcatatatga 5253827  T

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Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 215 - 246
Target Start/End: Original strand, 5255890 - 5255921
Alignment:
Q  215 taaaatctagaaacttcagccaaaaatggaaa 246  Q
    ||||||||||||||||||||||||||||||||    
T  5255890 taaaatctagaaacttcagccaaaaatggaaa 5255921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 215 - 246
Target Start/End: Complemental strand, 5334593 - 5334562
Alignment:
Q  215 taaaatctagaaacttcagccaaaaatggaaa 246  Q
    ||||||||||||||||||||||||||||||||    
T  5334593 taaaatctagaaacttcagccaaaaatggaaa 5334562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 5124532 - 5124443
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    ||||||||||||||||| ||||||||  ||  |||||||||| ||||    |||||||||||| |||||||| | ||| || ||||||||    
T  5124532 agtatagaacctggtaataaagtggaatttgtttttgtttttaagaaccgcttcattgtgaaggagacaacaatgtatattatatatgat 5124443  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 47985482 - 47985393
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    ||||||||||| |||||||||||||||||   | ||||||||||||||| |||||||||||||| || | ||||||||||||||||||||    
T  47985482 agtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtatatgat 47985393  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 48004056 - 48003967
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    ||||||||||| |||||||||||||||||   | ||||||||||||||| |||||||||||||| || | ||||||||||||||||||||    
T  48004056 agtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtatatgat 48003967  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 47994769 - 47994680
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    ||||||||| | |||||||||||||||||   | ||||||||||||||| |||||||||||||| || | ||||||||||||||||||||    
T  47994769 agtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtatatgat 47994680  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 48013341 - 48013252
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    ||||||||| | |||||||||||||||||   | ||||||||||||||| |||||||||||||| || | ||||||||||||||||||||    
T  48013341 agtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtatatgat 48013252  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 36213010 - 36212942
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagaca 87  Q
    ||||||||||||||| | ||| ||||||||  | |||||||||||||  ||||||||||||||||||||    
T  36213010 agtatagaacctggtgataaaatggaggttgttgttgtttttgagaacaatttcattgtgaagaagaca 36212942  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 25569046 - 25569090
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgag 63  Q
    |||||||||||||| |||||||||||||||  |||||||||||||    
T  25569046 agtatagaacctggaaacaaagtggaggttgtttttgtttttgag 25569090  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 7884199 - 7884155
Alignment:
Q  64 aatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    ||||| |||||||||||||| |||||| |||||||||| ||||||    
T  7884199 aatgaattcattgtgaagaaaacaacaatttatcttgtctatgat 7884155  T

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Target: scaffold1476 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1476
Description:

Target: scaffold1476; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 48 - 106
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgt 77  Q
    ||||||||||||||||| ||||||||||||  | |||||| ||||||  ||||||||||    
T  48 agtatagaacctggtaataaagtggaggttgctgttgtttatgagaacaatttcattgt 106  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 22583391 - 22583333
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgt 77  Q
    ||||||||||||||||| ||||||||||||  | |||||| ||||||  ||||||||||    
T  22583391 agtatagaacctggtaataaagtggaggttgctgttgtttatgagaacaatttcattgt 22583333  T

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