View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21393_high_1 (Length: 643)

Name: NF21393_high_1
Description: NF21393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21393_high_1
NF21393_high_1
[»] chr3 (1 HSPs)
chr3 (15-626)||(46618211-46618823)


Alignment Details
Target: chr3 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 15 - 626
Target Start/End: Original strand, 46618211 - 46618823
Alignment:
Q  15 caaaggaagaagataaattaaattggtgcataaattannnnnnngagagaaaattggtacataattagtaatgtcaaagattagggttaatatccaaagt 114  Q
    |||||||||||||||||||||||||||||||||||||       |||||||||||           ||||||||||||||||||||||||||||||||||    
T  46618211 caaaggaagaagataaattaaattggtgcataaattatttttttgagagaaaatt-----------agtaatgtcaaagattagggttaatatccaaagt 46618299  T
Q  115 gggggacctttcacgcgacttaatgaaaaaagttgaagcagcgtcggtatcaagctgttactatgaaagtttgacaagtatacattgcaaataaagttcc 214  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46618300 gggg-acctttcacgcgacttaatgaaaaaagttgaagcagcgtcggtatcaagctgttactatgaaagtttgacaagtatacattgcaaataaagttcc 46618398  T
Q  215 ttttatgtatggtgcatacgtaggggaatgatttaggctttcctaatttttctgcttct-----------gtttgattgcaccattcatgaaccagattt 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||    
T  46618399 ttttatgtatggtgcatacgtaggggaatgatttaggctttcctaatttttctgcttctcatgtgcttctgtttgattgcaccattcatgaaccagattt 46618498  T
Q  304 tctaatattacaaaaaagcaaattcctccnnnnnnnnnnnn----ggtgaatcagttacagttaagatgttaaaaaattaggttggatttaatatggaag 399  Q
    |||||||| ||||||||||||||||||||                |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46618499 tctaatat-acaaaaaagcaaattcctccaaaaaaaaaaaaaaaaggtgaatcagttacagttaagatgttaaaaaattaggttggatttaatatggaag 46618597  T
Q  400 gcacaaatagcaaaggaataggaaaaacaattgcagcgtgattaataatcacatcatgaacacaatgctgtgataaaaaagtggaaagtttatgtggtga 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  46618598 gcacaaatagcaaaggaataggaaaaacaattgcagcgtgattaataatcacatcatgaacacaatgctgtgataaaaaagtggaaag-ttatgtggtga 46618696  T
Q  500 gatttctaaaatgattacattaaagagaagactataaaggtgtgattaatagaacgtgctatttttatgattgaatgggttgattgacgcattaatatac 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  46618697 gatttctaaaatgattacattaaagagaagactataaaggtgtgattaatagaacgtgctatttttatgattgaatgggttgattcacgcattaatatac 46618796  T
Q  600 actttgatttgaaacatagcattaaag 626  Q
    |||||||||||||||||||||||||||    
T  46618797 actttgatttgaaacatagcattaaag 46618823  T

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