View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21393_high_3 (Length: 517)
Name: NF21393_high_3
Description: NF21393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21393_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 58 - 499
Target Start/End: Complemental strand, 43583648 - 43583207
Alignment:
| Q |
58 |
taagtagtagtaggagattgtctataaaacccttcatttcttccactgaactgtctttgtggaattggttgaactgatatcattccttgaggtacagaaa |
157 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43583648 |
taagtagtagtaggagattgtctataaaacccttcatttcttccactgaactgtctttgtggaattggttgaactgatatcattccttgaggtacagaaa |
43583549 |
T |
|
| Q |
158 |
gagatgctggaggaggtggagagatatcagcgagggaatagcgaagaagatcggtgttggcagcgtcgagttccttttgaagcctttgaacttgtctttg |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
43583548 |
gagatgctggaggaggtggagagatatcagcgagggaatagcgaagaagatcggtgttagcagcgtcgagttccttttgaagcctttgaacttgtctttg |
43583449 |
T |
|
| Q |
258 |
tagaaaagagatggctcctacacatccataaactggatccctaactcgtgcttcggcttcgtaagcaagggagttcacagcatcctccctttggtgaggg |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43583448 |
tagaaaagagatggctcctacacatccataaactggatccctaactcgtgcttcggcttcataagcaagggagttcacagcatcctccctttggtgaggg |
43583349 |
T |
|
| Q |
358 |
aggagttcattgagaagctttgtgacattgctagcaccaaatattttgtgcacgtttgcaaatttttgaggctcttctggagggaagtaaggtgcaaaga |
457 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43583348 |
agaagttcattgagaagctttgtgacattgctagcaccaaatattttgtgcacgtttgcaaatttttgaggctcttctggagggaagtaaggtgcaaaga |
43583249 |
T |
|
| Q |
458 |
tgcatcctggcatgcattttctcctcaagaatttgcaggcag |
499 |
Q |
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| T |
43583248 |
tgcatcctggcatgcattttctcctcaagaatttgcaggcag |
43583207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 43583699 - 43583743
Alignment:
| Q |
18 |
tgagtgaaggtggaggatgaggaggaaatcatatgtgaattaagt |
62 |
Q |
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| T |
43583699 |
tgagtgaaggtggaggaggaggaggaaatcatatgtgaattaagt |
43583743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 380 - 457
Target Start/End: Original strand, 32513111 - 32513188
Alignment:
| Q |
380 |
tgacattgctagcaccaaatattttgtgcacgtttgcaaatttttgaggctcttctggagggaagtaaggtgcaaaga |
457 |
Q |
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| T |
32513111 |
tgacattgctagcaccaaagactttgtgaacattagcaaatttgtgaggctcatcagcagggaagtaaggagcaaaga |
32513188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 197 - 478
Target Start/End: Complemental strand, 34675520 - 34675239
Alignment:
| Q |
197 |
agcgaagaagatcggtgttggcagcgtcgagttccttttgaagcctttgaacttgtctttgtagaaaagagatggctcctacacatccataaactggatc |
296 |
Q |
| |
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||||||||||||||| || |||| || |||||||||||||| || ||||||||||| || || |||||||| || || ||||| |||||||| ||||| |
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| T |
34675520 |
agcgaagaagatcggcattagcagaatcaagttccttttgaagtctctgaacttgtctctgaaggaaagagatagcaccaacacaaccataaacaggatc |
34675421 |
T |
|
| Q |
297 |
cctaactcgtgcttcggcttcgtaagcaagggagttcacagcatcctccctttggtgagggaggagttcattgagaagctttgtgacattgctagcacca |
396 |
Q |
| |
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|| || ||||| |||||||| ||||||||||| ||||| ||||| || || ||||||||||||||||| ||||| | ||||||||| ||||| || || |
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| T |
34675420 |
tctcacacgtgcctcggcttcataagcaagggaattcactgcatcttctctctggtgagggaggagttcgttgaggatctttgtgacgttgcttgcgccg |
34675321 |
T |
|
| Q |
397 |
aatattttgtgcacgtttgcaaatttttgaggctcttctggagggaagtaaggtgcaaagatgcatcctggcatgcattttc |
478 |
Q |
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|| || ||||| |||||||||||||||||||| ||||| || || ||||| |||||||||||||| |||||||||||||||| |
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| T |
34675320 |
aagatcttgtgaacgtttgcaaatttttgaggttcttccggtggaaagtatggtgcaaagatgcagcctggcatgcattttc |
34675239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 226 - 499
Target Start/End: Original strand, 12360614 - 12360887
Alignment:
| Q |
226 |
agttccttttgaagcctttgaacttgtctttgtagaaaagagatggctcctacacatccataaactggatccctaactcgtgcttcggcttcgtaagcaa |
325 |
Q |
| |
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||||||||||| ||||| |||||||||||| || | || ||||| || || || |||||||||||||| | | | ||| || ||||| ||||||| |
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| T |
12360614 |
agttccttttggagcctaataacttgtctttggaggactgaaatggcaccgacgcaaccataaactggatcttttatccttgcctcagcttcataagcaa |
12360713 |
T |
|
| Q |
326 |
gggagttcacagcatcctccctttggtgagggaggagttcattgagaagctttgtgacattgctagcaccaaatattttgtgcacgtttgcaaatttttg |
425 |
Q |
| |
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| |||||||| ||||| |||||||| || || | | |||||| ||||| || | |||||||| ||||||||||||||||| || |||||||||||||| |
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| T |
12360714 |
gagagttcactgcatcttccctttgatgtggttgcacttcattcagaagtttacttacattgcttgcaccaaatattttgtgaacatttgcaaatttttg |
12360813 |
T |
|
| Q |
426 |
aggctcttctggagggaagtaaggtgcaaagatgcatcctggcatgcattttctcctcaagaatttgcaggcag |
499 |
Q |
| |
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|| |||||||| ||||| || || ||||| ||||| |||||||||| || || ||||| || ||||| |||| |
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| T |
12360814 |
tggttcttctggtgggaaatatggagcaaatatgcaatctggcatgcacttccttctcaaaaacttgcaagcag |
12360887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 223 - 461
Target Start/End: Complemental strand, 591411 - 591173
Alignment:
| Q |
223 |
tcgagttccttttgaagcctttgaacttgtctttgtagaaaagagatggctcctacacatccataaactggatccctaactcgtgcttcggcttcgtaag |
322 |
Q |
| |
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|||||||||||||||||| | | | ||||||||| || | ||| || ||||| ||||| ||||| |||||||| ||| | |||||| ||||| |||| |
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| T |
591411 |
tcgagttccttttgaagcttaaggagttgtctttgaagcacagatatagctccaacacaaccatacactggatctttaatccttgcttcagcttcataag |
591312 |
T |
|
| Q |
323 |
caagggagttcacagcatcctccctttggtgagggaggagttcattgagaagctttgtgacattgctagcaccaaatattttgtgcacgtttgcaaattt |
422 |
Q |
| |
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| || || ||||| | ||| || ||||| || || | | |||||| |||| || | ||||| || ||||||||||||||||| || |||||||| || |
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| T |
591311 |
ctagagaattcaccgtatcttctctttgatggggtaaaacttcatttagaattttgctaacattacttgcaccaaatattttgtgaacatttgcaaactt |
591212 |
T |
|
| Q |
423 |
ttgaggctcttctggagggaagtaaggtgcaaagatgca |
461 |
Q |
| |
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|||||||||||||| ||||| ||||||||||| ||||| |
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| T |
591211 |
atgaggctcttctggtgggaaataaggtgcaaaaatgca |
591173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 382 - 461
Target Start/End: Complemental strand, 600829 - 600750
Alignment:
| Q |
382 |
acattgctagcaccaaatattttgtgcacgtttgcaaatttttgaggctcttctggagggaagtaaggtgcaaagatgca |
461 |
Q |
| |
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|||||||| ||||||||||||||||| || || ||||||| |||||||||||||| ||||| ||||||||||| ||||| |
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| T |
600829 |
acattgcttgcaccaaatattttgtgaacattgacaaatttatgaggctcttctggtgggaaataaggtgcaaaaatgca |
600750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 313 - 455
Target Start/End: Complemental strand, 15262785 - 15262643
Alignment:
| Q |
313 |
gcttcgtaagcaagggagttcacagcatcctccctttggtgagggaggagttcattgagaagctttgtgacattgctagcaccaaatattttgtgcacgt |
412 |
Q |
| |
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||||| |||||||| || ||||||||||| || | |||||||||| | | ||||||||||||||||| |||||||| || ||||| ||| | || || | |
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| T |
15262785 |
gcttcataagcaagtgaattcacagcatcttcacgttggtgagggtgtaaatcattgagaagctttgtaacattgcttgctccaaaaattctatgaacat |
15262686 |
T |
|
| Q |
413 |
ttgcaaatttttgaggctcttctggagggaagtaaggtgcaaa |
455 |
Q |
| |
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||||||||||||| |||| || || || || ||||||||||| |
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| T |
15262685 |
ttgcaaatttttgtggctgatcaggtggaaaataaggtgcaaa |
15262643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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