View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21393_high_4 (Length: 421)

Name: NF21393_high_4
Description: NF21393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21393_high_4
NF21393_high_4
[»] chr6 (13 HSPs)
chr6 (265-418)||(5351703-5351856)
chr6 (265-417)||(5135751-5135911)
chr6 (248-388)||(5439339-5439479)
chr6 (265-417)||(5100650-5100810)
chr6 (247-345)||(5398361-5398459)
chr6 (242-354)||(5352691-5352803)
chr6 (234-335)||(5242360-5242459)
chr6 (279-345)||(5255984-5256050)
chr6 (232-329)||(5155866-5155963)
chr6 (238-333)||(5448927-5449022)
chr6 (238-345)||(5180644-5180751)
chr6 (285-330)||(5334453-5334498)
chr6 (301-345)||(5283109-5283153)
[»] chr3 (4 HSPs)
chr3 (277-345)||(47985230-47985298)
chr3 (277-345)||(47994517-47994585)
chr3 (277-345)||(48003804-48003872)
chr3 (277-345)||(48013089-48013157)
[»] scaffold1476 (1 HSPs)
scaffold1476 (340-379)||(189-228)


Alignment Details
Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 265 - 418
Target Start/End: Original strand, 5351703 - 5351856
Alignment:
Q  265 ctgtcaagagattctctactgaagaggagtccagtgatgacttcaatcagaacagaaagaagaaaaatcgaattgaatgaaagattgtaaaacaatggcc 364  Q
    ||||||||||||||||||||||||||||| ||| ||||||| | |||||||||||||||||||||||  || | || |||||||| ||||| |||||||     
T  5351703 ctgtcaagagattctctactgaagaggagcccactgatgaccttaatcagaacagaaagaagaaaaactgagtggattgaaagatagtaaagcaatggcg 5351802  T
Q  365 gagcaaaaatcaattcttatggtgaccgctaacaattg-tttccatttttggctg 418  Q
    ||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||    
T  5351803 gagcaaaaatcaatt-ttatggtgacggctaacaattgttttccatttttggctg 5351856  T

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Target: chr6; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 265 - 417
Target Start/End: Complemental strand, 5135911 - 5135751
Alignment:
Q  265 ctgtcaagagattctctactgaagaggagtccagtgatgacttcaatcagaacagaaagaagaaaaatcgaattgaatga--------aagattgtaaaa 356  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||| | ||||||        ||||| |||||     
T  5135911 ctgtcaagagattctctactgaagaggagcccaatgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatggaagatagtaaag 5135812  T
Q  357 caatggccgagcaaaaatcaattcttatggtgaccgctaacaattg-tttccatttttggct 417  Q
    ||||||||||||||||||||||| ||||| |||| ||||||||||| |||||||||||||||    
T  5135811 caatggccgagcaaaaatcaatt-ttatgatgactgctaacaattgttttccatttttggct 5135751  T

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Target: chr6; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 248 - 388
Target Start/End: Original strand, 5439339 - 5439479
Alignment:
Q  248 tgatgaaaaagaacgccctgtcaagagattctctactgaagaggagtccagtgatgacttcaatcagaacagaaagaagaaaaatcgaattgaatgaaag 347  Q
    ||||||||| ||||||||||  |||||||||||||||| ||||||| ||| |||||||||||||| |||||||||||||||||||||||| ||||||||     
T  5439339 tgatgaaaatgaacgccctgctaagagattctctactggagaggagcccactgatgacttcaatcggaacagaaagaagaaaaatcgaatggaatgaaaa 5439438  T
Q  348 attgtaaaacaatggccgagcaaaaatcaattcttatggtg 388  Q
    || |||||||||||||   | ||| ||||||||||||||||    
T  5439439 atggtaaaacaatggcttggtaaacatcaattcttatggtg 5439479  T

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Target: chr6; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 265 - 417
Target Start/End: Complemental strand, 5100810 - 5100650
Alignment:
Q  265 ctgtcaagagattctctactgaagaggagtccagtgatgacttcaatcagaacagaaagaagaaaaatcga--------attgaatgaaagattgtaaaa 356  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||        | | |||||||||| ||||      
T  5100810 ctgtcaagagattctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaagatagtaatg 5100711  T
Q  357 caatggccgagcaaaaatcaattcttatggtgaccgctaacaattg-tttccatttttggct 417  Q
    ||||||||||||||||||||||| ||||| |||| ||||||||||| |||||||||||||||    
T  5100710 caatggccgagcaaaaatcaatt-ttatgatgactgctaacaattgttttccatttttggct 5100650  T

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Target: chr6; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 247 - 345
Target Start/End: Original strand, 5398361 - 5398459
Alignment:
Q  247 atgatgaaaaagaacgccctgtcaagagattctctactgaagaggagtccagtgatgacttcaatcagaacagaaagaagaaaaatcgaattgaatgaa 345  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||| |||||||||||||  ||| |||||||||    
T  5398361 atgatgaaaatgaacgccctgtcaagagattctctactgaagatgagcccactgatgacttcaatcagaaaagaaagaagaaaagccgagttgaatgaa 5398459  T

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Target: chr6; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 242 - 354
Target Start/End: Complemental strand, 5352803 - 5352691
Alignment:
Q  242 tagtgatgatgaaaaagaacgccctgtcaagagattctctactgaagaggagtccagtgatgacttcaatcagaacagaaagaagaaaaatcgaattgaa 341  Q
    ||||||||||||||| || | |||||||||||||||||||| ||||||||||  || ||| ||  ||||||||||||||||||||||||||||||| |||    
T  5352803 tagtgatgatgaaaatgagcaccctgtcaagagattctctattgaagaggagcacactgaagatgtcaatcagaacagaaagaagaaaaatcgaatggaa 5352704  T
Q  342 tgaaagattgtaa 354  Q
    |||||||| ||||    
T  5352703 tgaaagatggtaa 5352691  T

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Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 5242459 - 5242360
Alignment:
Q  234 attacttgtagtgatgatgaaaaagaacgccctgtcaagagattctctactgaagaggagtccagtgatgacttcaatcagaacagaaagaagaaaaatc 333  Q
    ||||||| ||| | ||||||| | |||||| ||||||||||||||||||||||||||||| |   ||||||||||||||||||| |||  ||||||||||    
T  5242459 attacttatagaggtgatgaagatgaacgctctgtcaagagattctctactgaagaggagcctgctgatgacttcaatcagaacggaa--aagaaaaatc 5242362  T

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Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 279 - 345
Target Start/End: Complemental strand, 5256050 - 5255984
Alignment:
Q  279 tctactgaagaggagtccagtgatgacttcaatcagaacagaaagaagaaaaatcgaattgaatgaa 345  Q
    ||||||||||||||| ||| |||||| |||||||||||||||||||||||||| ||| | |||||||    
T  5256050 tctactgaagaggagcccactgatgatttcaatcagaacagaaagaagaaaaaccgagtggaatgaa 5255984  T

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Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 329
Target Start/End: Complemental strand, 5155963 - 5155866
Alignment:
Q  232 caattacttgtagtgatgatgaaaaagaacgccctgtcaagagattctctactgaagaggagtccagtgatgacttcaatcagaacagaaagaagaaa 329  Q
    ||||| |||||||| |||||||||| |||| | |||||||||||||  || |||||| |||  ||| |||||||| |||||| |||||||||||||||    
T  5155963 caatttcttgtagtaatgatgaaaatgaactctctgtcaagagattagcttctgaaggggatcccattgatgactgcaatcaaaacagaaagaagaaa 5155866  T

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Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 238 - 333
Target Start/End: Original strand, 5448927 - 5449022
Alignment:
Q  238 cttgtagtgatgatgaaaaagaacgccctgtcaagagattctctactgaagaggagtccagtgatgacttcaatcagaacagaaagaagaaaaatc 333  Q
    ||||||| | ||||||||| ||| || || | ||||  |||||||||||||| ||  ||   ||||||||||||||||||||||||||||||||||    
T  5448927 cttgtagaggtgatgaaaatgaatgctctctaaagaacttctctactgaagacgatcccgcagatgacttcaatcagaacagaaagaagaaaaatc 5449022  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 345
Target Start/End: Complemental strand, 5180751 - 5180644
Alignment:
Q  238 cttgtagtgatgatgaaaaagaacgccctgtcaagagattctctactgaagaggagtccagtgatgacttcaatcagaacagaaagaagaaaaatcgaat 337  Q
    ||||||| | ||||||||  ||| || |||| |||||||||||| ||||||| ||   |   || ||||||||||||||||||||||||||||| ||| |    
T  5180751 cttgtagaggtgatgaaactgaatgctctgtgaagagattctctgctgaagacgaacacgccgacgacttcaatcagaacagaaagaagaaaaaccgagt 5180652  T
Q  338 tgaatgaa 345  Q
     |||||||    
T  5180651 ggaatgaa 5180644  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 330
Target Start/End: Original strand, 5334453 - 5334498
Alignment:
Q  285 gaagaggagtccagtgatgacttcaatcagaacagaaagaagaaaa 330  Q
    ||||| ||| ||| ||||||||||||| ||||||||||||||||||    
T  5334453 gaagatgagcccactgatgacttcaatgagaacagaaagaagaaaa 5334498  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 5283153 - 5283109
Alignment:
Q  301 atgacttcaatcagaacagaaagaagaaaaatcgaattgaatgaa 345  Q
    ||||||||| ||||||||||||||||||||| ||| | |||||||    
T  5283153 atgacttcactcagaacagaaagaagaaaaaccgagtggaatgaa 5283109  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 277 - 345
Target Start/End: Complemental strand, 47985298 - 47985230
Alignment:
Q  277 tctctactgaagaggagtccagtgatgacttcaatcagaacagaaagaagaaaaatcgaattgaatgaa 345  Q
    |||||||||||||||||||||  ||||||||||||||||  |||||||||||||| ||| | |||||||    
T  47985298 tctctactgaagaggagtccatcgatgacttcaatcagactagaaagaagaaaaaacgagtggaatgaa 47985230  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 277 - 345
Target Start/End: Complemental strand, 47994585 - 47994517
Alignment:
Q  277 tctctactgaagaggagtccagtgatgacttcaatcagaacagaaagaagaaaaatcgaattgaatgaa 345  Q
    |||||||||||||||||||||  ||||||||||||||||  |||||||||||||| ||| | |||||||    
T  47994585 tctctactgaagaggagtccatcgatgacttcaatcagactagaaagaagaaaaaacgagtggaatgaa 47994517  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 277 - 345
Target Start/End: Complemental strand, 48003872 - 48003804
Alignment:
Q  277 tctctactgaagaggagtccagtgatgacttcaatcagaacagaaagaagaaaaatcgaattgaatgaa 345  Q
    |||||||||||||||||||||  ||||||||||||||||  |||||||||||||| ||| | |||||||    
T  48003872 tctctactgaagaggagtccatcgatgacttcaatcagactagaaagaagaaaaaacgagtggaatgaa 48003804  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 277 - 345
Target Start/End: Complemental strand, 48013157 - 48013089
Alignment:
Q  277 tctctactgaagaggagtccagtgatgacttcaatcagaacagaaagaagaaaaatcgaattgaatgaa 345  Q
    |||||||||||||||||||||  ||||||||||||||||  |||||||||||||| ||| | |||||||    
T  48013157 tctctactgaagaggagtccatcgatgacttcaatcagactagaaagaagaaaaaacgagtggaatgaa 48013089  T

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Target: scaffold1476 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold1476
Description:

Target: scaffold1476; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 340 - 379
Target Start/End: Original strand, 189 - 228
Alignment:
Q  340 aatgaaagattgtaaaacaatggccgagcaaaaatcaatt 379  Q
    |||||||||| ||||||||||||| |||||||||||||||    
T  189 aatgaaagatggtaaaacaatggcggagcaaaaatcaatt 228  T

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