View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21393_high_5 (Length: 420)
Name: NF21393_high_5
Description: NF21393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21393_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 14 - 414
Target Start/End: Complemental strand, 51039614 - 51039223
Alignment:
| Q |
14 |
aatatgatgacatcaacattttggcatctctcatcctcaatcttgtatgtctaataaaacaatttggtagacgtggacacctcaattgatgtatgcatct |
113 |
Q |
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| T |
51039614 |
aatatgatgacatcaacattttggcatctctcatcctcaatcttgtatgtctaataaaacaatttggtagacgtggacacctcaattgatgtatgcatct |
51039515 |
T |
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| Q |
114 |
tgcaagaaaaatttacaaaagaaaatgatgtgatataaatgatagattagtaatgcactaatgttgtttggtacgaaaatagtatatacgaaaagcaaga |
213 |
Q |
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| T |
51039514 |
tgcaagaaaaatttacaaaagaaaatgatgtgatataaatgatagattagtaatgcactaatgttgtatggtacgaaaatagtatctacgaaaagcaaga |
51039415 |
T |
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| Q |
214 |
attaaactaaattaaagttgtaattaccaataaatacatcaacaattttctatatcaccatattacccttatatggcaagtgctttcttactgtcttcaa |
313 |
Q |
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| T |
51039414 |
attacactaaattaaagttgtaattaccaataaatccatcaacaattttatatatcaccatattacccttatatggcaagtgctttcttactg---tcaa |
51039318 |
T |
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| Q |
314 |
atttcgttaaaagctttccgtacaacatagcaatgattagagagatagagaagnnnnnnnnnnntgaagtattaaatgaatgtttgaaaattgatgatgt |
413 |
Q |
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| T |
51039317 |
atttcgttaaaagctttccgtacgacatagcaatgattagagagatagagaa------aaaaaatgaagtattaaatgaatgtttgaaaatttatgatgt |
51039224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 209 - 348
Target Start/End: Original strand, 12170179 - 12170318
Alignment:
| Q |
209 |
caagaattaaactaaattaaagttgtaattaccaataaatacatcaacaattttctatatcaccatattacccttatatggcaagtgctttcttactgtc |
308 |
Q |
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| T |
12170179 |
caagaattacactaatttaaagttgtaattaccaatctatccatcagctattttctatattaccatattgcccttgtatggcaagtgttttcctactgtc |
12170278 |
T |
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| Q |
309 |
ttcaaatttcgttaaaagctttccgtacaacatagcaatg |
348 |
Q |
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| T |
12170279 |
gtataatttcgttaaaatcttttcttactatatagcaatg |
12170318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 201 - 348
Target Start/End: Original strand, 45473189 - 45473336
Alignment:
| Q |
201 |
acgaaaagcaagaattaaactaaattaaagttgtaattaccaataaatacatcaacaattttctatatcaccatattacccttatatggcaagtgctttc |
300 |
Q |
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| T |
45473189 |
acgaaaagcaagaattacactaatttaaagttgtaattaccaatctatccatcagctattttctatattaccatatcgcccttgtatggcaagtgttttt |
45473288 |
T |
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| Q |
301 |
ttactgtcttcaaatttcgttaaaagctttccgtacaacatagcaatg |
348 |
Q |
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| T |
45473289 |
ctactgtcgtataatttcgttaaaatcttttcttactatatagcaatg |
45473336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 200 - 295
Target Start/End: Original strand, 31195838 - 31195933
Alignment:
| Q |
200 |
tacgaaaagcaagaattaaactaaattaaagttgtaattaccaataaatacatcaacaattttctatatcaccatattacccttatatggcaagtg |
295 |
Q |
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| T |
31195838 |
tacgaaaagcaagaattacactaatttaaagttgtaattaccgatatatccatcagccattttctatattaccatgttgcccttgtatgacaagtg |
31195933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 201 - 268
Target Start/End: Complemental strand, 14018009 - 14017942
Alignment:
| Q |
201 |
acgaaaagcaagaattaaactaaattaaagttgtaattaccaataaatacatcaacaattttctatat |
268 |
Q |
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| T |
14018009 |
acgaaaagcaagaattacactaattttaagttgtaattaccaatctattcaacagctattttctatat |
14017942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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