View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21393_low_10 (Length: 349)
Name: NF21393_low_10
Description: NF21393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21393_low_10 |
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| [»] scaffold0011 (2 HSPs) |
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| [»] scaffold0250 (1 HSPs) |
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| [»] scaffold0246 (1 HSPs) |
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Alignment Details
Target: scaffold0011 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 222294 - 222638
Alignment:
| Q |
1 |
cgaattggaaaataagaatcattcaacaaa---------aacctcaaaaagcaaaaggtctcgcgctaataatggtgaggatcatatcatggcagagaga |
91 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
222294 |
cgaattggaaaataagaatcattcaacaaaaacctcaaaaacctcaaaaaccaaaaggtctcgtgctaataatggtgaggatcatatcatggcagagaga |
222393 |
T |
|
| Q |
92 |
aagcgaagagagaaactcacccaaagcttcattgctcttgcagctcttgttcccaaccttaaaaaggtaca--atgttatgaaatgattatatgcagttc |
189 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
222394 |
aagcgaagagagaaactcacccaaagcttcattgctcttgcagctcttgttcccaaccttaaaaaggtacaatatgttataaaatgattatatgcagttc |
222493 |
T |
|
| Q |
190 |
aaagttaagggtattttggtgaaaaattatttaataca-gtttgaaaattgttttaaagaagtattataaaaatgacaagtaaaaaacgcataagagtct |
288 |
Q |
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||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
222494 |
aaagttaagggtattttggtgaaaaattatttaatgcatatttgaaaattgttttaaagaagtattataaaaatgacaagtaaaaaacgcataagagtct |
222593 |
T |
|
| Q |
289 |
tatatttagagacgaagatattataatcttgattactttattcat |
333 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
222594 |
tatatttagagacgaagatattataatcttgattactctattcat |
222638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 184405 - 184743
Alignment:
| Q |
1 |
cgaattggaaaataagaatcattcaacaaa---------aacctcaaaaagcaaaaggtctcgcgctaataatggtgaggatcatatcatggcagagaga |
91 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
184405 |
cgaattggaaaataagaatcattcaacaaaaacctcaaaaacctcaaaaaccaaaaggtctcgtgctaataatggtgaggatcatatcatggcagagaga |
184504 |
T |
|
| Q |
92 |
aagcgaagagagaaactcacccaaagcttcattgctcttgcagctcttgttcccaaccttaaaaaggtacaatgttatgaaatgattatatgcagttcaa |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
184505 |
aagcgaagagagaaactcacccaaagcttcattgctcttgcagctcttgttcccaaccttaaaaaggtacaatgttataaaatgattatatgcagttcaa |
184604 |
T |
|
| Q |
192 |
agttaagggtattttggtgaaaaattatttaataca-gtttgaaaattgttttaaagaagtattataaaaatgacaagtaaaaaacgcataagagtctta |
290 |
Q |
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||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
184605 |
agttaagggtattttggtgaaaaattatttaatccatgtttgaaaattgttttaaagaagtattataaaaatgac----aaaaaacgcataagagtctta |
184700 |
T |
|
| Q |
291 |
tatttagagacgaagatattataatcttgattactttattcat |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
184701 |
tatttagagacgaagatattataatcttgattactctattcat |
184743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 25 - 164
Target Start/End: Original strand, 17125154 - 17125293
Alignment:
| Q |
25 |
aacaaaaacctcaaaaagcaaaaggtctcgcgctaataatggtgaggatcatatcatggcagagagaaagcgaagagagaaactcacccaaagcttcatt |
124 |
Q |
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||||||||||||||| |||||||||||||| || | ||||| | |||||||||||||| ||||||||| ||||||||||||||||||||| ||||||| |
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| T |
17125154 |
aacaaaaacctcaaagagcaaaaggtctcgtactcttcatggtcaagatcatatcatggctgagagaaagagaagagagaaactcacccaaaacttcatt |
17125253 |
T |
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| Q |
125 |
gctcttgcagctcttgttcccaaccttaaaaaggtacaat |
164 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| |
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| T |
17125254 |
gctcttgcagctcttgttcctaaccttaaaaaggtacaat |
17125293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 17115720 - 17115856
Alignment:
| Q |
28 |
aaaaacctcaaaaagcaaaaggtctcgcgctaataatggtgaggatcatatcatggcagagagaaagcgaagagagaaactcacccaaagcttcattgct |
127 |
Q |
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|||||||||||| |||||||||||||| || | ||||| | |||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
17115720 |
aaaaacctcaaagagcaaaaggtctcgtactcttcatggtcaagatcatatcatggctgagagaaagagaagagagaaactcacccaaaacttcattgct |
17115819 |
T |
|
| Q |
128 |
cttgcagctcttgttcccaaccttaaaaaggtacaat |
164 |
Q |
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||||||||||||||||| ||||||||||||||||||| |
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| T |
17115820 |
cttgcagctcttgttcctaaccttaaaaaggtacaat |
17115856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 25239281 - 25239441
Alignment:
| Q |
1 |
cgaattggaaaataagaatcattcaacaaaaacctcaaaaagcaaaaggtctcgcgctaataatggtgaggatcatatcatggcagagagaaagcgaaga |
100 |
Q |
| |
|
|||||||||||||| |||||| |||||| ||||||||||| |||||||| |||| ||| || ||| |||||| |||||||| |||||||| |||||| |
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| T |
25239281 |
cgaattggaaaatatgaatcactcaacagaaacctcaaaaggcaaaaggcctcgtgctcat---ggtagggatcacatcatggctgagagaaatcgaaga |
25239377 |
T |
|
| Q |
101 |
gagaaactcacccaaagcttcattgctcttgcagctcttgttcccaaccttaaaaaggtacaat |
164 |
Q |
| |
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|| ||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25239378 |
gaaaaactcacccagaccttcattgctcttgcagctcttgttcctaaccttaaaaaggtacaat |
25239441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 25 - 160
Target Start/End: Complemental strand, 25113323 - 25113191
Alignment:
| Q |
25 |
aacaaaaacctcaaaaagcaaaaggtctcgcgctaataatggtgaggatcatatcatggcagagagaaagcgaagagagaaactcacccaaagcttcatt |
124 |
Q |
| |
|
||||||||||||||||||||||||| | || ||| || ||| ||||| |||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
25113323 |
aacaaaaacctcaaaaagcaaaaggccacgtgctcat---ggtagagatcacatcatggctgagagaaatcgaagagagaaactcacccaaagcttcatt |
25113227 |
T |
|
| Q |
125 |
gctcttgcagctcttgttcccaaccttaaaaaggta |
160 |
Q |
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|
|||||||||||||||||||| |||||||| |||||| |
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| T |
25113226 |
gctcttgcagctcttgttcctaaccttaagaaggta |
25113191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 25 - 164
Target Start/End: Complemental strand, 25064600 - 25064464
Alignment:
| Q |
25 |
aacaaaaacctcaaaaagcaaaaggtctcgcgctaataatggtgaggatcatatcatggcagagagaaagcgaagagagaaactcacccaaagcttcatt |
124 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||| || ||| ||||| |||||||| |||||||| ||||||||||||||||| || | ||||||| |
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|
| T |
25064600 |
aacaaaaacctcaaaaagcaaaaggcctcgtgctcat---ggtagagatcacatcatggctgagagaaatcgaagagagaaactcactcagaccttcatt |
25064504 |
T |
|
| Q |
125 |
gctcttgcagctcttgttcccaaccttaaaaaggtacaat |
164 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||| |
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| T |
25064503 |
gctcttgcagctcttgttcctaaccttaagaaggtacaat |
25064464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0250 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0250
Description:
Target: scaffold0250; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 44 - 160
Target Start/End: Original strand, 15729 - 15845
Alignment:
| Q |
44 |
aaaaggtctcgcgctaataatggtgaggatcatatcatggcagagagaaagcgaagagagaaactcacccaaagcttcattgctcttgcagctcttgttc |
143 |
Q |
| |
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||||||||||| | |||| ||||| | |||||||||||||| ||||||||| |||||||||||||||| || | |||||||||||||||||||||||||| |
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| T |
15729 |
aaaaggtctcgtggtaatcatggtcatgatcatatcatggctgagagaaagagaagagagaaactcacacagaacttcattgctcttgcagctcttgttc |
15828 |
T |
|
| Q |
144 |
ccaaccttaaaaaggta |
160 |
Q |
| |
|
| ||||||||||||||| |
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|
| T |
15829 |
ctaaccttaaaaaggta |
15845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0246 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0246
Description:
Target: scaffold0246; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 24 - 162
Target Start/End: Complemental strand, 5249 - 5114
Alignment:
| Q |
24 |
caacaaaaacctcaaaaagcaaaaggtctcgcgctaataatggtgaggatcatatcatggcagagagaaagcgaagagagaaactcacccaaagcttcat |
123 |
Q |
| |
|
||||||||||||| ||| |||||||||||| || || | ||| |||||||||||||| ||||||||||||||||||||||| | |||||||||||| |
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|
| T |
5249 |
caacaaaaacctctcaaaccaaaaggtctcgagccaac---gctgatgatcatatcatggctgagagaaagcgaagagagaaacttagccaaagcttcat |
5153 |
T |
|
| Q |
124 |
tgctcttgcagctcttgttcccaaccttaaaaaggtaca |
162 |
Q |
| |
|
||||||||||||||||||||| ||| | ||||||||||| |
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|
| T |
5152 |
tgctcttgcagctcttgttcctaacttgaaaaaggtaca |
5114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 144
Target Start/End: Original strand, 4891960 - 4892035
Alignment:
| Q |
69 |
aggatcatatcatggcagagagaaagcgaagagagaaactcacccaaagcttcattgctcttgcagctcttgttcc |
144 |
Q |
| |
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|||| |||||||| |||||||||||| ||||||||||||||| || |||| |||||||| || |||||| |||| |
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| T |
4891960 |
aggaccatatcatagcagagagaaagagaagagagaaactcagtcagtgcttgattgctctagctgctcttattcc |
4892035 |
T |
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