View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21393_low_11 (Length: 327)
Name: NF21393_low_11
Description: NF21393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21393_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 27998430 - 27998740
Alignment:
| Q |
1 |
tggcaaaaagtatgagtatggacctgtgttaagagttttaatcatttgtagtgcatgatcatgtatacaacaaagataaagtaagcaatccttcatcctt |
100 |
Q |
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| T |
27998430 |
tggcaaaaagtatgagtatggacctgtgttaagagttttaatcatttgtagtgcatgatcatgtatagaacaaagataaagtaagcaatccttcatcctt |
27998529 |
T |
|
| Q |
101 |
gtcaatttttctcatgcttaaaaatatagtttcaagatttcattacaattttatagttctagcttaacctacatgcttaaaattaatttggagtggattt |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27998530 |
gtcaatttttctcatccttaaaaatatagtttcaagatttcattacaattttatagttctagcttaacctacatgcttaaaattaatttggagtggattt |
27998629 |
T |
|
| Q |
201 |
tatagatgattatgttatgatcacattttgcactaatataagtaaattgaatggttagcatcaacacagttctttccaccctttaactaaattgagcaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27998630 |
tatagatgattatgttatgatcacattttgcactaatataagtaaattgaatggttagcatcaacacagttctttccaccctttaactaaattgagcaag |
27998729 |
T |
|
| Q |
301 |
aatgttaaaaa |
311 |
Q |
| |
|
|||||| |||| |
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| T |
27998730 |
aatgttgaaaa |
27998740 |
T |
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