View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21393_low_12 (Length: 305)

Name: NF21393_low_12
Description: NF21393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21393_low_12
NF21393_low_12
[»] chr6 (36 HSPs)
chr6 (19-229)||(5398252-5398459)
chr6 (19-272)||(5439217-5439479)
chr6 (149-302)||(5351703-5351856)
chr6 (149-301)||(5135751-5135911)
chr6 (149-301)||(5100650-5100810)
chr6 (23-104)||(5156017-5156098)
chr6 (126-238)||(5352691-5352803)
chr6 (19-108)||(5177945-5178034)
chr6 (19-108)||(5279770-5279859)
chr6 (23-104)||(5372307-5372388)
chr6 (19-108)||(5688903-5688992)
chr6 (26-108)||(2939128-2939210)
chr6 (19-108)||(5242512-5242601)
chr6 (22-229)||(5180644-5180860)
chr6 (24-108)||(23127310-23127394)
chr6 (19-108)||(5346235-5346324)
chr6 (106-213)||(5155866-5155973)
chr6 (19-229)||(5255984-5256203)
chr6 (19-108)||(5098417-5098506)
chr6 (118-219)||(5242360-5242459)
chr6 (19-108)||(5351606-5351695)
chr6 (23-85)||(5334395-5334457)
chr6 (19-104)||(5100822-5100907)
chr6 (19-104)||(5135923-5136008)
chr6 (19-108)||(5427106-5427195)
chr6 (19-217)||(5448815-5449022)
chr6 (19-108)||(5283224-5283313)
chr6 (19-108)||(5126629-5126718)
chr6 (49-104)||(2657155-2657210)
chr6 (19-98)||(5072692-5072771)
chr6 (19-108)||(5065449-5065538)
chr6 (19-108)||(5352863-5352952)
chr6 (19-107)||(5253739-5253827)
chr6 (19-108)||(5124443-5124532)
chr6 (169-214)||(5334453-5334498)
chr6 (185-229)||(5283109-5283153)
[»] chr3 (8 HSPs)
chr3 (19-108)||(47985393-47985482)
chr3 (19-108)||(48003967-48004056)
chr3 (19-108)||(47994680-47994769)
chr3 (19-108)||(48013252-48013341)
chr3 (161-229)||(47985230-47985298)
chr3 (161-229)||(47994517-47994585)
chr3 (161-229)||(48003804-48003872)
chr3 (161-229)||(48013089-48013157)
[»] chr7 (1 HSPs)
chr7 (19-87)||(36212942-36213010)
[»] chr4 (2 HSPs)
chr4 (19-63)||(25569046-25569090)
chr4 (64-108)||(7884155-7884199)
[»] scaffold1476 (2 HSPs)
scaffold1476 (224-263)||(189-228)
scaffold1476 (19-77)||(48-106)
[»] chr2 (1 HSPs)
chr2 (19-77)||(22583333-22583391)


Alignment Details
Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 36)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 5398252 - 5398459
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgatttgaatacaa 118  Q
    ||||||||||||||||||||||| ||||||   |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5398252 agtatagaacctggtaacaaagttgaggttgtctttgttttcgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgatttgaatgcaa 5398351  T
Q  119 ttacttgtagtgatgatgaaaaagaacgccctgtcaagagattctctactgaagaggagtccagtgatgacttcaatcagaacagaaagaagaaaaatcg 218  Q
    || ||||||   |||||||||| |||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||| |||||||||||||  ||    
T  5398352 ttgcttgta---atgatgaaaatgaacgccctgtcaagagattctctactgaagatgagcccactgatgacttcaatcagaaaagaaagaagaaaagccg 5398448  T
Q  219 aattgaatgaa 229  Q
    | |||||||||    
T  5398449 agttgaatgaa 5398459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 19 - 272
Target Start/End: Original strand, 5439217 - 5439479
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat---------t 109  Q
    ||||||||||||||||||||||||||||||  |||||||||  |||||||||||||||  || |||||| ||| |||||| |||||||||         |    
T  5439217 agtatagaacctggtaacaaagtggaggttgtttttgttttcaagaatgatttcattgccaaaaagacagcagcttatctcgtatatgatgcacaaaatt 5439316  T
Q  110 tgaatacaattacttgtagtgatgatgaaaaagaacgccctgtcaagagattctctactgaagaggagtccagtgatgacttcaatcagaacagaaagaa 209  Q
    ||||| |  || || ||||   ||||||||| ||||||||||  |||||||||||||||| ||||||| ||| |||||||||||||| ||||||||||||    
T  5439317 tgaatgccgttgctagtagatgtgatgaaaatgaacgccctgctaagagattctctactggagaggagcccactgatgacttcaatcggaacagaaagaa 5439416  T
Q  210 gaaaaatcgaattgaatgaaagattgtaaaacaatggccgagcaaaaatcaattcttatggtg 272  Q
    |||||||||||| |||||||| || |||||||||||||   | ||| ||||||||||||||||    
T  5439417 gaaaaatcgaatggaatgaaaaatggtaaaacaatggcttggtaaacatcaattcttatggtg 5439479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 149 - 302
Target Start/End: Original strand, 5351703 - 5351856
Alignment:
Q  149 ctgtcaagagattctctactgaagaggagtccagtgatgacttcaatcagaacagaaagaagaaaaatcgaattgaatgaaagattgtaaaacaatggcc 248  Q
    ||||||||||||||||||||||||||||| ||| ||||||| | |||||||||||||||||||||||  || | || |||||||| ||||| |||||||     
T  5351703 ctgtcaagagattctctactgaagaggagcccactgatgaccttaatcagaacagaaagaagaaaaactgagtggattgaaagatagtaaagcaatggcg 5351802  T
Q  249 gagcaaaaatcaattcttatggtgaccgctaacaattg-tttccatttttggctg 302  Q
    ||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||    
T  5351803 gagcaaaaatcaatt-ttatggtgacggctaacaattgttttccatttttggctg 5351856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 149 - 301
Target Start/End: Complemental strand, 5135911 - 5135751
Alignment:
Q  149 ctgtcaagagattctctactgaagaggagtccagtgatgacttcaatcagaacagaaagaagaaaaatcgaattgaatga--------aagattgtaaaa 240  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||| | ||||||        ||||| |||||     
T  5135911 ctgtcaagagattctctactgaagaggagcccaatgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatggaagatagtaaag 5135812  T
Q  241 caatggccgagcaaaaatcaattcttatggtgaccgctaacaattg-tttccatttttggct 301  Q
    ||||||||||||||||||||||| ||||| |||| ||||||||||| |||||||||||||||    
T  5135811 caatggccgagcaaaaatcaatt-ttatgatgactgctaacaattgttttccatttttggct 5135751  T

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Target: chr6; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 149 - 301
Target Start/End: Complemental strand, 5100810 - 5100650
Alignment:
Q  149 ctgtcaagagattctctactgaagaggagtccagtgatgacttcaatcagaacagaaagaagaaaaatcga--------attgaatgaaagattgtaaaa 240  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||        | | |||||||||| ||||      
T  5100810 ctgtcaagagattctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaagatagtaatg 5100711  T
Q  241 caatggccgagcaaaaatcaattcttatggtgaccgctaacaattg-tttccatttttggct 301  Q
    ||||||||||||||||||||||| ||||| |||| ||||||||||| |||||||||||||||    
T  5100710 caatggccgagcaaaaatcaatt-ttatgatgactgctaacaattgttttccatttttggct 5100650  T

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Target: chr6; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 5156098 - 5156017
Alignment:
Q  23 tagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtata 104  Q
    ||||||||||||||||||||||||| ||||||||||| |||| | |||||||||||||||||||||||||||||||||||||    
T  5156098 tagaacctggtaacaaagtggaggtccattttgttttcgagattaatttcattgtgaagaagacaacagtttatcttgtata 5156017  T

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Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 126 - 238
Target Start/End: Complemental strand, 5352803 - 5352691
Alignment:
Q  126 tagtgatgatgaaaaagaacgccctgtcaagagattctctactgaagaggagtccagtgatgacttcaatcagaacagaaagaagaaaaatcgaattgaa 225  Q
    ||||||||||||||| || | |||||||||||||||||||| ||||||||||  || ||| ||  ||||||||||||||||||||||||||||||| |||    
T  5352803 tagtgatgatgaaaatgagcaccctgtcaagagattctctattgaagaggagcacactgaagatgtcaatcagaacagaaagaagaaaaatcgaatggaa 5352704  T
Q  226 tgaaagattgtaa 238  Q
    |||||||| ||||    
T  5352703 tgaaagatggtaa 5352691  T

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Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 5177945 - 5178034
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    |||||||||||| |||||||||||||||||  | ||||||||||||| | ||||||||||||||| |||||||||||||| |||||||||    
T  5177945 agtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtatatgat 5178034  T

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Target: chr6; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 5279770 - 5279859
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    |||||||||||| |||||||||||||||||  | ||||||||||||| | ||||||||||||||| |||||||||||||| |||||||||    
T  5279770 agtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtatatgat 5279859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 5372307 - 5372388
Alignment:
Q  23 tagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtata 104  Q
    ||||||||||||||||||||||| | ||||||||| | |||||||||||||||||||||||||||||| ||||||| |||||    
T  5372307 tagaacctggtaacaaagtggagatccattttgttctcgagaatgatttcattgtgaagaagacaacaatttatctcgtata 5372388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 5688992 - 5688903
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    |||||||||||| |||||||||||||||||  || |||||||||||| | ||||||||||||||| |||||||||||||| |||||||||    
T  5688992 agtatagaaccttgtaacaaagtggaggttgtttctgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtatatgat 5688903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 2939128 - 2939210
Alignment:
Q  26 aacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    |||||||||||||||||||||| ||||||||| | |||||||||| ||||||||||||| ||||| ||||||| |||||||||    
T  2939128 aacctggtaacaaagtggaggtccattttgttatcgagaatgattgcattgtgaagaaggcaacaatttatctcgtatatgat 2939210  T

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Target: chr6; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 5242601 - 5242512
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    |||||||||||||||||||||||||||||   |||||||||||||||   |||||||||||||||||||  ||||||||| |||||||||    
T  5242601 agtatagaacctggtaacaaagtggaggtcgtttttgtttttgagaacagtttcattgtgaagaagacagtagtttatctcgtatatgat 5242512  T

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Target: chr6; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 229
Target Start/End: Complemental strand, 5180860 - 5180644
Alignment:
Q  22 atagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatat---------gatttga 112  Q
    |||||||| |||||||||||||||||   |||||||||||||||   ||||||||||||||||||| || ||||||| ||||||         |||||||    
T  5180860 atagaacccggtaacaaagtggaggtcgtttttgtttttgagaaaagtttcattgtgaagaagacagcaatttatctggtatatgatgcacaagatttga 5180761  T
Q  113 atacaattacttgtagtgatgatgaaaaagaacgccctgtcaagagattctctactgaagaggagtccagtgatgacttcaatcagaacagaaagaagaa 212  Q
    ||   ||| ||||||| | ||||||||  ||| || |||| |||||||||||| ||||||| ||   |   || ||||||||||||||||||||||||||    
T  5180760 atctcattgcttgtagaggtgatgaaactgaatgctctgtgaagagattctctgctgaagacgaacacgccgacgacttcaatcagaacagaaagaagaa 5180661  T
Q  213 aaatcgaattgaatgaa 229  Q
    ||| ||| | |||||||    
T  5180660 aaaccgagtggaatgaa 5180644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 23127394 - 23127310
Alignment:
Q  24 agaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    |||||||||||||||| ||||||||  | | ||||||||||||| |||| |||||||||| ||||||||||||||||||||||||    
T  23127394 agaacctggtaacaaaatggaggttgttgtcgtttttgagaatggtttcgttgtgaagaatacaacagtttatcttgtatatgat 23127310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 5346235 - 5346324
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    ||||||||||||||||||||||||||||||    ||||| ||||||||| ||||||||||||||||||| || |||||||  ||||||||    
T  5346235 agtatagaacctggtaacaaagtggaggttgtcgttgttattgagaatggtttcattgtgaagaagacagcaatttatctcatatatgat 5346324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 213
Target Start/End: Complemental strand, 5155973 - 5155866
Alignment:
Q  106 gatttgaatacaattacttgtagtgatgatgaaaaagaacgccctgtcaagagattctctactgaagaggagtccagtgatgacttcaatcagaacagaa 205  Q
    ||||||||| ||||| |||||||| |||||||||| |||| | |||||||||||||  || |||||| |||  ||| |||||||| |||||| |||||||    
T  5155973 gatttgaatgcaatttcttgtagtaatgatgaaaatgaactctctgtcaagagattagcttctgaaggggatcccattgatgactgcaatcaaaacagaa 5155874  T
Q  206 agaagaaa 213  Q
    ||||||||    
T  5155873 agaagaaa 5155866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 5256203 - 5255984
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat---------t 109  Q
    ||||| ||||| |||||||||||||||||    ||||||||  |||||||||||||||||||||||||| || ||||| | |||||||||         |    
T  5256203 agtattgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaatttatttggtatatgatgcacaaaatt 5256104  T
Q  110 tgaatacaattacttgtagtgatgatgaaaaagaacgccctgtcaagagattctctactgaagaggagtccagtgatgacttcaatcagaacagaaagaa 209  Q
    |||||   ||| |||||||   ||||||||  ||| |  |||   |||| || ||||||||||||||| ||| |||||| ||||||||||||||||||||    
T  5256103 tgaatcacattgcttgtagccgtgatgaaagtgaatggtctgaagagagtttttctactgaagaggagcccactgatgatttcaatcagaacagaaagaa 5256004  T
Q  210 gaaaaatcgaattgaatgaa 229  Q
    |||||| ||| | |||||||    
T  5256003 gaaaaaccgagtggaatgaa 5255984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 5098417 - 5098506
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcatt-ttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    |||||||||||||||||||||||||||| ||||| ||||||| |||||   |||||||||||| |||||| |||||||||| |||||||||    
T  5098417 agtatagaacctggtaacaaagtggagg-tcattgttgttttcgagaacagtttcattgtgaaaaagacagcagtttatctggtatatgat 5098506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 118 - 219
Target Start/End: Complemental strand, 5242459 - 5242360
Alignment:
Q  118 attacttgtagtgatgatgaaaaagaacgccctgtcaagagattctctactgaagaggagtccagtgatgacttcaatcagaacagaaagaagaaaaatc 217  Q
    ||||||| ||| | ||||||| | |||||| ||||||||||||||||||||||||||||| |   ||||||||||||||||||| |||  ||||||||||    
T  5242459 attacttatagaggtgatgaagatgaacgctctgtcaagagattctctactgaagaggagcctgctgatgacttcaatcagaacggaa--aagaaaaatc 5242362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 5351606 - 5351695
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    |||||||||||  ||||||||||||||||   ||||||||| |||||||||| ||||||||| ||||||  ||||||||| |||||||||    
T  5351606 agtatagaacccagtaacaaagtggaggtcatttttgttttcgagaatgattgcattgtgaaaaagacagtagtttatctcgtatatgat 5351695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 5334395 - 5334457
Alignment:
Q  23 tagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaaga 85  Q
    |||||||||||||||||||||||||   ||||||||| ||||||||||||||| |||||||||    
T  5334395 tagaacctggtaacaaagtggaggtcgtttttgttttcgagaatgatttcattttgaagaaga 5334457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 5100907 - 5100822
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtata 104  Q
    ||||||||||| |||||||||||||||||   | |||||||||||||   |||||||||||| |||||| |||||||||| |||||    
T  5100907 agtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtata 5100822  T

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Target: chr6; HSP #24
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 5136008 - 5135923
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtata 104  Q
    ||||||||||| |||||||||||||||||   | |||||||||||||   |||||||||||| |||||| |||||||||| |||||    
T  5136008 agtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtata 5135923  T

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Target: chr6; HSP #25
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 5427106 - 5427195
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    ||||||||||||||||||||| |||||||   |||||||||||||||   |||| |||||| |||||||  ||||||||| |||||||||    
T  5427106 agtatagaacctggtaacaaaatggaggtcgtttttgtttttgagaacagtttcgttgtgacgaagacagtagtttatctcgtatatgat 5427195  T

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Target: chr6; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 5448815 - 5449022
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatat---------gatt 109  Q
    ||||||||||| || |||||||||||| |   ||||||||| ||||||||||||| |||| ||||||||  ||| ||||| ||||||         ||||    
T  5448815 agtatagaacccggaaacaaagtggagatcgtttttgttttcgagaatgatttcactgtggagaagacagtagtatatctggtatatgatgcacaagatt 5448914  T
Q  110 tgaatacaattacttgtagtgatgatgaaaaagaacgccctgtcaagagattctctactgaagaggagtccagtgatgacttcaatcagaacagaaagaa 209  Q
    | ||    ||| ||||||| | ||||||||| ||| || || | ||||  |||||||||||||| ||  ||   ||||||||||||||||||||||||||    
T  5448915 ttaacgtcattgcttgtagaggtgatgaaaatgaatgctctctaaagaacttctctactgaagacgatcccgcagatgacttcaatcagaacagaaagaa 5449014  T
Q  210 gaaaaatc 217  Q
    ||||||||    
T  5449015 gaaaaatc 5449022  T

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Target: chr6; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 5283313 - 5283224
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcat-tttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    ||||| ||||| ||||||||||||||||| ||| ||||||||||| ||   ||||||||||||||||||| || ||||||| |||||||||    
T  5283313 agtatcgaaccaggtaacaaagtggaggt-catatttgtttttgaaaacagtttcattgtgaagaagacagcaatttatctggtatatgat 5283224  T

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Target: chr6; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 5126718 - 5126629
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    ||||||||| ||||||||||||| ||| ||  | |||||||| |||| | ||||||||||||||||||| | ||||||||  ||||||||    
T  5126718 agtatagaagctggtaacaaagttgagattgttgttgtttttaagaacggtttcattgtgaagaagacagctgtttatctcatatatgat 5126629  T

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Target: chr6; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 2657210 - 2657155
Alignment:
Q  49 cattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtata 104  Q
    |||||||| || |||||||||||||||||||||||| ||||| ||||||| |||||    
T  2657210 cattttgtattcgagaatgatttcattgtgaagaaggcaacaatttatctcgtata 2657155  T

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Target: chr6; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 5072771 - 5072692
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatct 98  Q
    |||||||| ||||||||| |||||||||||    ||||| ||||||| |||||||||||||| ||||||| | |||||||    
T  5072771 agtatagagcctggtaaccaagtggaggttgtcgttgttgttgagaacgatttcattgtgaaaaagacaataatttatct 5072692  T

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Target: chr6; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 5065538 - 5065449
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    ||||| |||||||| || ||||||||  ||  | ||||||||||||| | |||| ||||||||| |||||||||||||||  ||||||||    
T  5065538 agtattgaacctggaaataaagtggattttgttgttgtttttgagaacggtttcgttgtgaagaggacaacagtttatctcatatatgat 5065449  T

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Target: chr6; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 5352952 - 5352863
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    ||||| || |||||| ||||||| |||||   | ||||||| ||||||  |||||| ||||||||||||||| ||||||| |||||||||    
T  5352952 agtatggatcctggtgacaaagtagaggtggttattgttttcgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgat 5352863  T

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Target: chr6; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 5253739 - 5253827
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatga 107  Q
    ||||| |||||||| || ||||||||| ||  | |||||||||||||   |||||||||||||| ||| |||||||||||  |||||||    
T  5253739 agtattgaacctggaaataaagtggagtttgttgttgtttttgagaacagtttcattgtgaagaggacgacagtttatctcatatatga 5253827  T

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Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 5124532 - 5124443
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    ||||||||||||||||| ||||||||  ||  |||||||||| ||||    |||||||||||| |||||||| | ||| || ||||||||    
T  5124532 agtatagaacctggtaataaagtggaatttgtttttgtttttaagaaccgcttcattgtgaaggagacaacaatgtatattatatatgat 5124443  T

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Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 5334453 - 5334498
Alignment:
Q  169 gaagaggagtccagtgatgacttcaatcagaacagaaagaagaaaa 214  Q
    ||||| ||| ||| ||||||||||||| ||||||||||||||||||    
T  5334453 gaagatgagcccactgatgacttcaatgagaacagaaagaagaaaa 5334498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 5283153 - 5283109
Alignment:
Q  185 atgacttcaatcagaacagaaagaagaaaaatcgaattgaatgaa 229  Q
    ||||||||| ||||||||||||||||||||| ||| | |||||||    
T  5283153 atgacttcactcagaacagaaagaagaaaaaccgagtggaatgaa 5283109  T

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Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 47985482 - 47985393
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    ||||||||||| |||||||||||||||||   | ||||||||||||||| |||||||||||||| || | ||||||||||||||||||||    
T  47985482 agtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtatatgat 47985393  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 48004056 - 48003967
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    ||||||||||| |||||||||||||||||   | ||||||||||||||| |||||||||||||| || | ||||||||||||||||||||    
T  48004056 agtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtatatgat 48003967  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 47994769 - 47994680
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    ||||||||| | |||||||||||||||||   | ||||||||||||||| |||||||||||||| || | ||||||||||||||||||||    
T  47994769 agtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtatatgat 47994680  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 48013341 - 48013252
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    ||||||||| | |||||||||||||||||   | ||||||||||||||| |||||||||||||| || | ||||||||||||||||||||    
T  48013341 agtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtatatgat 48013252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 47985298 - 47985230
Alignment:
Q  161 tctctactgaagaggagtccagtgatgacttcaatcagaacagaaagaagaaaaatcgaattgaatgaa 229  Q
    |||||||||||||||||||||  ||||||||||||||||  |||||||||||||| ||| | |||||||    
T  47985298 tctctactgaagaggagtccatcgatgacttcaatcagactagaaagaagaaaaaacgagtggaatgaa 47985230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 47994585 - 47994517
Alignment:
Q  161 tctctactgaagaggagtccagtgatgacttcaatcagaacagaaagaagaaaaatcgaattgaatgaa 229  Q
    |||||||||||||||||||||  ||||||||||||||||  |||||||||||||| ||| | |||||||    
T  47994585 tctctactgaagaggagtccatcgatgacttcaatcagactagaaagaagaaaaaacgagtggaatgaa 47994517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 48003872 - 48003804
Alignment:
Q  161 tctctactgaagaggagtccagtgatgacttcaatcagaacagaaagaagaaaaatcgaattgaatgaa 229  Q
    |||||||||||||||||||||  ||||||||||||||||  |||||||||||||| ||| | |||||||    
T  48003872 tctctactgaagaggagtccatcgatgacttcaatcagactagaaagaagaaaaaacgagtggaatgaa 48003804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 48013157 - 48013089
Alignment:
Q  161 tctctactgaagaggagtccagtgatgacttcaatcagaacagaaagaagaaaaatcgaattgaatgaa 229  Q
    |||||||||||||||||||||  ||||||||||||||||  |||||||||||||| ||| | |||||||    
T  48013157 tctctactgaagaggagtccatcgatgacttcaatcagactagaaagaagaaaaaacgagtggaatgaa 48013089  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 36213010 - 36212942
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagaca 87  Q
    ||||||||||||||| | ||| ||||||||  | |||||||||||||  ||||||||||||||||||||    
T  36213010 agtatagaacctggtgataaaatggaggttgttgttgtttttgagaacaatttcattgtgaagaagaca 36212942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 25569046 - 25569090
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgag 63  Q
    |||||||||||||| |||||||||||||||  |||||||||||||    
T  25569046 agtatagaacctggaaacaaagtggaggttgtttttgtttttgag 25569090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 7884199 - 7884155
Alignment:
Q  64 aatgatttcattgtgaagaagacaacagtttatcttgtatatgat 108  Q
    ||||| |||||||||||||| |||||| |||||||||| ||||||    
T  7884199 aatgaattcattgtgaagaaaacaacaatttatcttgtctatgat 7884155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1476 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold1476
Description:

Target: scaffold1476; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 189 - 228
Alignment:
Q  224 aatgaaagattgtaaaacaatggccgagcaaaaatcaatt 263  Q
    |||||||||| ||||||||||||| |||||||||||||||    
T  189 aatgaaagatggtaaaacaatggcggagcaaaaatcaatt 228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1476; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 48 - 106
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgt 77  Q
    ||||||||||||||||| ||||||||||||  | |||||| ||||||  ||||||||||    
T  48 agtatagaacctggtaataaagtggaggttgctgttgtttatgagaacaatttcattgt 106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 22583391 - 22583333
Alignment:
Q  19 agtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgt 77  Q
    ||||||||||||||||| ||||||||||||  | |||||| ||||||  ||||||||||    
T  22583391 agtatagaacctggtaataaagtggaggttgctgttgtttatgagaacaatttcattgt 22583333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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