View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21393_low_16 (Length: 268)
Name: NF21393_low_16
Description: NF21393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21393_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 47368983 - 47368749
Alignment:
| Q |
18 |
tctactttgaccaggaaaccttcaacagctttgcaagcttccgcgattttgtatggttaagcatgttcacattgcgagacgaaaagagttcaatctattc |
117 |
Q |
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| T |
47368983 |
tctactttgaccaggaaaccttcaacagctttgcaagcttccgcaattttgtatggttaagcatgttcacattgcgagacaaaaagagttcaatctattc |
47368884 |
T |
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| Q |
118 |
ctttaccctcaaatgcggcgaatcttctcgcttcactcaaagagactggcttaaaatatttgaatttgtgatggaacgaggaatcgagtatcttaacttc |
217 |
Q |
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| T |
47368883 |
ctttaccctcaaatgcggcgaatcttctcgattcactcaaagagactgggttaaaatttttaaatttgtgatggaacgaggaatcgagtatcttaacttc |
47368784 |
T |
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| Q |
218 |
gacatgtctggtaaaaattgtcaaatcaaattacc |
252 |
Q |
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| T |
47368783 |
gacatgtctggtaaaaagtgtcaaatcaaattacc |
47368749 |
T |
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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 7175966 - 7175902
Alignment:
| Q |
188 |
atggaacgaggaatcgagtatcttaacttcgacatgtctggtaaaaattgtcaaatcaaattacc |
252 |
Q |
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| T |
7175966 |
atggaaagaggagtcgagaatcttaacttcgacatgtctggtaaaaatcgtcttatcacattacc |
7175902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 38490453 - 38490375
Alignment:
| Q |
74 |
ttaagcatgttcacattgcgagacgaaaagagttcaatctattcctttaccctcaaatgcggcgaatcttctcgcttca |
152 |
Q |
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| T |
38490453 |
ttaaccatgttctcgttgctagataaaaagatttcaatccattcttttaccttcaaatgcggtcaatcttctcgcttca |
38490375 |
T |
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