View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21393_low_19 (Length: 242)

Name: NF21393_low_19
Description: NF21393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21393_low_19
NF21393_low_19
[»] chr2 (21 HSPs)
chr2 (31-235)||(2767900-2768105)
chr2 (31-234)||(6798492-6798696)
chr2 (33-227)||(39456147-39456341)
chr2 (31-235)||(16763932-16764137)
chr2 (31-235)||(34401135-34401340)
chr2 (33-235)||(44708774-44708977)
chr2 (31-235)||(17697193-17697398)
chr2 (31-227)||(6784249-6784445)
chr2 (31-235)||(14388046-14388259)
chr2 (31-227)||(24206492-24206696)
chr2 (91-235)||(42518380-42518525)
chr2 (33-160)||(19907308-19907434)
chr2 (31-125)||(40561211-40561305)
chr2 (88-210)||(4047377-4047499)
chr2 (86-210)||(20941733-20941856)
chr2 (142-210)||(26581545-26581613)
chr2 (88-210)||(161432-161554)
chr2 (47-126)||(19581960-19582039)
chr2 (142-207)||(38149341-38149406)
chr2 (132-203)||(7744707-7744778)
chr2 (182-210)||(11022252-11022280)
[»] chr6 (13 HSPs)
chr6 (31-235)||(7371935-7372140)
chr6 (31-235)||(32438034-32438237)
chr6 (40-235)||(32517847-32518043)
chr6 (31-203)||(20524354-20524526)
chr6 (67-220)||(18644284-18644437)
chr6 (39-228)||(33267838-33268027)
chr6 (83-235)||(9399137-9399290)
chr6 (67-177)||(11356211-11356321)
chr6 (39-126)||(10569375-10569462)
chr6 (39-126)||(7050734-7050821)
chr6 (39-126)||(6902125-6902212)
chr6 (142-210)||(17935548-17935616)
chr6 (185-235)||(11356316-11356367)
[»] chr4 (21 HSPs)
chr4 (31-235)||(41760679-41760884)
chr4 (31-235)||(11254882-11255087)
chr4 (33-228)||(35402628-35402823)
chr4 (33-235)||(49524101-49524304)
chr4 (31-235)||(51012894-51013099)
chr4 (31-203)||(43520405-43520577)
chr4 (39-235)||(2692238-2692435)
chr4 (31-187)||(42981587-42981743)
chr4 (87-211)||(11641112-11641236)
chr4 (31-147)||(834096-834212)
chr4 (31-147)||(5438747-5438863)
chr4 (149-235)||(41760552-41760638)
chr4 (39-126)||(48645809-48645896)
chr4 (39-126)||(54387116-54387203)
chr4 (142-207)||(32652936-32653001)
chr4 (88-210)||(28101484-28101606)
chr4 (142-210)||(4614587-4614655)
chr4 (97-210)||(7150446-7150559)
chr4 (155-210)||(27385571-27385626)
chr4 (153-207)||(13449570-13449624)
chr4 (142-194)||(10544180-10544232)
[»] chr3 (28 HSPs)
chr3 (31-235)||(17516296-17516500)
chr3 (31-235)||(30599160-30599365)
chr3 (34-235)||(46198709-46198911)
chr3 (31-235)||(44275170-44275375)
chr3 (33-228)||(27898075-27898269)
chr3 (31-235)||(53188652-53188857)
chr3 (31-235)||(21349681-21349886)
chr3 (31-235)||(43766108-43766313)
chr3 (31-235)||(54899420-54899633)
chr3 (31-203)||(2661201-2661373)
chr3 (40-203)||(44795195-44795358)
chr3 (39-213)||(610589-610763)
chr3 (51-227)||(2377998-2378172)
chr3 (87-228)||(35904709-35904850)
chr3 (39-212)||(46113462-46113635)
chr3 (34-187)||(2225165-2225326)
chr3 (39-209)||(13466154-13466324)
chr3 (34-125)||(23292232-23292323)
chr3 (39-126)||(48829886-48829973)
chr3 (142-210)||(32843436-32843504)
chr3 (143-210)||(23876220-23876287)
chr3 (39-126)||(51685586-51685673)
chr3 (142-207)||(41945414-41945479)
chr3 (142-210)||(35862440-35862508)
chr3 (142-193)||(2976359-2976410)
chr3 (132-204)||(49495067-49495139)
chr3 (39-77)||(42280483-42280521)
chr3 (31-64)||(35904849-35904882)
[»] chr8 (22 HSPs)
chr8 (34-228)||(41041545-41041739)
chr8 (31-227)||(15307259-15307455)
chr8 (31-227)||(15487628-15487824)
chr8 (33-227)||(5037405-5037599)
chr8 (31-227)||(27405104-27405300)
chr8 (31-227)||(29238161-29238357)
chr8 (31-203)||(27692133-27692305)
chr8 (31-224)||(40338637-40338837)
chr8 (31-203)||(33707795-33707967)
chr8 (31-211)||(13485114-13485294)
chr8 (87-235)||(3152483-3152632)
chr8 (39-225)||(11720339-11720525)
chr8 (31-125)||(42942761-42942855)
chr8 (88-207)||(12515887-12516006)
chr8 (39-126)||(41824733-41824820)
chr8 (39-126)||(7744193-7744280)
chr8 (39-126)||(26239504-26239591)
chr8 (67-125)||(22273270-22273328)
chr8 (142-207)||(28432939-28433004)
chr8 (142-210)||(25371236-25371304)
chr8 (88-171)||(24285797-24285880)
chr8 (168-210)||(10770940-10770982)
[»] chr7 (30 HSPs)
chr7 (31-235)||(38473076-38473281)
chr7 (30-235)||(24227373-24227579)
chr7 (31-235)||(22154867-22155072)
chr7 (31-235)||(22210782-22210987)
chr7 (31-235)||(6604492-6604697)
chr7 (33-208)||(23905232-23905407)
chr7 (32-227)||(46438470-46438666)
chr7 (34-235)||(34775914-34776115)
chr7 (33-235)||(45360306-45360508)
chr7 (31-213)||(35692326-35692507)
chr7 (31-203)||(27665031-27665203)
chr7 (40-203)||(29995501-29995664)
chr7 (72-235)||(69132-69296)
chr7 (83-235)||(47385159-47385312)
chr7 (33-160)||(39858271-39858397)
chr7 (90-212)||(48310974-48311096)
chr7 (39-125)||(37114591-37114677)
chr7 (88-210)||(11683621-11683743)
chr7 (88-211)||(32840488-32840610)
chr7 (142-207)||(4321800-4321865)
chr7 (88-195)||(7402914-7403021)
chr7 (90-193)||(23168648-23168751)
chr7 (31-104)||(13169050-13169122)
chr7 (142-207)||(34691873-34691938)
chr7 (132-204)||(34784575-34784647)
chr7 (133-210)||(40360951-40361028)
chr7 (142-198)||(13035937-13035993)
chr7 (143-207)||(48302873-48302936)
chr7 (121-160)||(13169123-13169162)
chr7 (86-126)||(38550316-38550356)
[»] chr1 (21 HSPs)
chr1 (31-235)||(6817668-6817873)
chr1 (31-220)||(27088253-27088442)
chr1 (40-235)||(45045455-45045651)
chr1 (39-235)||(50555055-50555251)
chr1 (40-235)||(37345312-37345508)
chr1 (67-235)||(25277319-25277488)
chr1 (31-235)||(26224497-26224710)
chr1 (67-228)||(33600104-33600265)
chr1 (31-203)||(46582573-46582745)
chr1 (39-213)||(15105421-15105595)
chr1 (151-235)||(37087316-37087401)
chr1 (33-146)||(31237556-31237661)
chr1 (31-125)||(3012516-3012610)
chr1 (31-125)||(51895228-51895322)
chr1 (142-210)||(42558848-42558916)
chr1 (39-126)||(52642698-52642785)
chr1 (142-210)||(3369967-3370035)
chr1 (132-204)||(51122987-51123059)
chr1 (31-80)||(2870566-2870615)
chr1 (182-210)||(5784211-5784239)
chr1 (146-210)||(32086009-32086073)
[»] chr5 (20 HSPs)
chr5 (31-227)||(42472444-42472640)
chr5 (34-227)||(28821364-28821557)
chr5 (31-220)||(21841968-21842157)
chr5 (33-235)||(2180743-2180943)
chr5 (31-203)||(2853253-2853425)
chr5 (109-235)||(17575700-17575828)
chr5 (109-235)||(17577011-17577139)
chr5 (33-160)||(12800897-12801023)
chr5 (105-227)||(18624276-18624398)
chr5 (33-160)||(12738074-12738200)
chr5 (109-235)||(17574980-17575108)
chr5 (33-146)||(30464679-30464792)
chr5 (31-125)||(8540638-8540732)
chr5 (31-125)||(32134897-32134991)
chr5 (88-207)||(1344229-1344348)
chr5 (144-210)||(28036377-28036443)
chr5 (90-207)||(1343744-1343861)
chr5 (142-203)||(18341214-18341275)
chr5 (132-204)||(27349967-27350039)
chr5 (39-106)||(41494524-41494591)
[»] scaffold0564 (1 HSPs)
scaffold0564 (33-235)||(9238-9441)
[»] scaffold0004 (1 HSPs)
scaffold0004 (39-227)||(107547-107735)
[»] scaffold0920 (1 HSPs)
scaffold0920 (43-211)||(1497-1664)
[»] scaffold0345 (2 HSPs)
scaffold0345 (67-177)||(572-682)
scaffold0345 (185-235)||(677-728)


Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 31 - 235
Target Start/End: Original strand, 2767900 - 2768105
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2767900 aaggttttattcattcattgacaacctcttttcattacaacattacatgggtttggcacaatacaatagcattttaaacaacttaatcaaacaaaatact 2767999  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatccttt-gct 229  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2768000 cctatcaatatcttaatcaacctaagcttacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatcctttggct 2768099  T
Q  230 tctcca 235  Q
    ||||||    
T  2768100 tctcca 2768105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 31 - 234
Target Start/End: Original strand, 6798492 - 6798696
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    ||||||| | ||||||||||||||||||||||||  ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6798492 aaggtttgactcattcattgacaacctcttttcattacaacattacatggacttggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 6798591  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatc-ctttgct 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||    
T  6798592 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttattcatcaaccttgccctccaaacctcttctctccccctatctcttggct 6798691  T
Q  230 tctcc 234  Q
    |||||    
T  6798692 tctcc 6798696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 33 - 227
Target Start/End: Original strand, 39456147 - 39456341
Alignment:
Q  33 ggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcc 132  Q
    ||||| ||||||||||||||||||||||||||  ||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||     
T  39456147 ggtttgattcattcattgacaacctcttttcattacaacattacatggacttggcacaatacaataacattttaaacaactcaatcaaacaaaatactct 39456246  T
Q  133 tatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatcctttg 227  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  39456247 tatcaatatcttaattaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctgcccctatcctttg 39456341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 31 - 235
Target Start/End: Original strand, 16763932 - 16764137
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    ||||||| ||||||||||||||||||||||||||  ||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  16763932 aaggtttgattcattcattgacaacctcttttcattacaacattacatggacttggcacaatacaatagcattttaaacaactcagtcaaacaaaatact 16764031  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatccttt-gct 229  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||| |||    
T  16764032 cctatcaatatcttaatcaacctaagttcacttcctacacaatcaactttatccatcaaccttgccctctaaacctcttctctgcccctatcatttggct 16764131  T
Q  230 tctcca 235  Q
    ||||||    
T  16764132 tctcca 16764137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 31 - 235
Target Start/End: Complemental strand, 34401340 - 34401135
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    ||||||| ||||||||||||||||||||||||||  |||||||||||||   |||||||||| ||||| ||||||||||||||||||||||||||||| |    
T  34401340 aaggtttgattcattcattgacaacctcttttcattacaacattacatgaacttggcacaatgcaataacattttaaacaactcaatcaaacaaaataat 34401241  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatccttt-gct 229  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  34401240 cctatcaatatcttaatcaacctaagctcacttcctactcaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatcctttggct 34401141  T
Q  230 tctcca 235  Q
    ||||||    
T  34401140 tctcca 34401135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 33 - 235
Target Start/End: Complemental strand, 44708977 - 44708774
Alignment:
Q  33 ggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcc 132  Q
    ||||| ||||||||||||||||||||||||||  ||||||||||||||  ||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  44708977 ggtttgattcattcattgacaacctcttttcattacaacattacatggacttggcgcaatacaataacattttaaacaactcaatcaaacaaaatactcc 44708878  T
Q  133 tatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatccttt-gcttc 231  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  44708877 tatcaatatcttaatcaacctaagcccacttcctacacaattaactttatccatcaaccttgccctccaaacctcttctctgcccctatcctttggcttc 44708778  T
Q  232 tcca 235  Q
    ||||    
T  44708777 tcca 44708774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 31 - 235
Target Start/End: Original strand, 17697193 - 17697398
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    ||||||| |||||||| |||||||||||||||||  ||||||||||||||  |||||| |||||||||||||||||||||| ||||||||||||||||||    
T  17697193 aaggtttgattcattcgttgacaacctcttttcataacaacattacatggacttggcataatacaatagcattttaaacaattcaatcaaacaaaatact 17697292  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatccttt-gct 229  Q
    | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  17697293 catatcaatatcttaatcaacttaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatcatttggct 17697392  T
Q  230 tctcca 235  Q
    ||||||    
T  17697393 tctcca 17697398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 31 - 227
Target Start/End: Complemental strand, 6784445 - 6784249
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    ||||||| ||||||||||||||||||||||||||  ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6784445 aaggtttgattcattcattgacaacctcttttcattacaacattacatggacttggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 6784346  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatcctttg 227  Q
    |||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||    
T  6784345 cctatcaataacttaatcaacctaagttcacttcctaaacaatcaactttatccatcaaccttgccctccaaacctcttctttgcccctatcatttg 6784249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 31 - 235
Target Start/End: Complemental strand, 14388259 - 14388046
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattaca--------tgggattggcacaatacaatagcattttaaacaactcaatcaaac 122  Q
    ||||||| ||||||||||||||||||||||||||  |||||||||||        |||  ||||||||||||||||||||||||||||||||||||||||    
T  14388259 aaggtttgattcattcattgacaacctcttttcattacaacattacaacattacatggacttggcacaatacaatagcattttaaacaactcaatcaaac 14388160  T
Q  123 aaaatactcctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatc 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14388159 aaaatactcctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctgcccctatc 14388060  T
Q  223 cttt-gcttctcca 235  Q
     ||| |||||||||    
T  14388059 atttagcttctcca 14388046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 31 - 227
Target Start/End: Complemental strand, 24206696 - 24206492
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattaca--------tgggattggcacaatacaatagcattttaaacaactcaatcaaac 122  Q
    ||||||| ||||||||||||||||||||||||||  |||||||||||        |||  || | |||||||||||||||||||||||||||||||||||    
T  24206696 aaggtttgattcattcattgacaacctcttttcattacaacattacaacattacatggacttagaacaatacaatagcattttaaacaactcaatcaaac 24206597  T
Q  123 aaaatactcctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatc 222  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24206596 aaaatactcctatcaataacttaatcaacctaagctcacttcctacataatcaactttatccatcaaccttgccctccaaacctcttctctgcccctatc 24206497  T
Q  223 ctttg 227  Q
     ||||    
T  24206496 atttg 24206492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 91 - 235
Target Start/End: Complemental strand, 42518525 - 42518380
Alignment:
Q  91 atacaatagcattttaaacaactcaatcaaacaaaatactcctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaac 190  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||    
T  42518525 atacaataacattttaaacaactcaatcaaacaaaatactcctatcaatatcttaataaacctaagatcacttcttacacaatcaactttatccatcaac 42518426  T
Q  191 cttgccctccaaacctcttctctccccctatccttt-gcttctcca 235  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||    
T  42518425 cttgccctccaaacttcttctctccccctatcctttggcttctcca 42518380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 33 - 160
Target Start/End: Complemental strand, 19907434 - 19907308
Alignment:
Q  33 ggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcc 132  Q
    ||||| ||||||||||||| ||||||||||||  ||||||||||||||  |||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  19907434 ggtttgattcattcattgataacctcttttcattacaacattacatggacttggcacaat-caataacattttaaacaactcaatcaaacaaaatactcc 19907336  T
Q  133 tatcaatatcttaatcaacctaagctca 160  Q
    ||||||||||||||||||||||||||||    
T  19907335 tatcaatatcttaatcaacctaagctca 19907308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 31 - 125
Target Start/End: Original strand, 40561211 - 40561305
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaa 125  Q
    ||||||| ||||||||||||||||| ||||||||  ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  40561211 aaggtttgattcattcattgacaacatcttttcattacaacattacatggacttggcacaatacaatagcattttaaacaactcaatcaaacaaa 40561305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 88 - 210
Target Start/End: Original strand, 4047377 - 4047499
Alignment:
Q  88 acaatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatc 187  Q
    ||||||||||||||| ||||||||||||| ||| |||| ||   |||||||   |||||||||||||||||||||||||||||| |||||||| |||||     
T  4047377 acaatacaatagcatgttaaacaactcaaacaagcaaattatgactatcaaatacttaatcaacctaagctcacttcctacacagtcaactttgtccatt 4047476  T
Q  188 aaccttgccctccaaacctcttc 210  Q
    ||| |||||||||||||||||||    
T  4047477 aactttgccctccaaacctcttc 4047499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 86 - 210
Target Start/End: Original strand, 20941733 - 20941856
Alignment:
Q  86 gcacaatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatcca 185  Q
    |||||||||| || ||| ||||||||||||| ||| |||| ||   |||||||   ||||||||||||||||||||||||||||||||||||||| ||||    
T  20941733 gcacaatacagtaacatgttaaacaactcaaacaagcaaattatgactatcaaatacttaatcaacctaagctcacttcctacacaatcaactttgtcca 20941832  T
Q  186 tcaaccttgccctccaaacctcttc 210  Q
    ||||||||| | |||||||||||||    
T  20941833 tcaaccttg-catccaaacctcttc 20941856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 26581613 - 26581545
Alignment:
Q  142 cttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttc 210  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||| ||||||||||    
T  26581613 cttaatcaacctaagctcacttcatacacaatcaactttgtccatcaaccttcccctctaaacctcttc 26581545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 88 - 210
Target Start/End: Original strand, 161432 - 161554
Alignment:
Q  88 acaatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatc 187  Q
    |||||| | |||||| ||||||||||||| ||| |||| ||   |||||||   ||||||||||| || ||||||| ||||| | |||||||| ||||||    
T  161432 acaatagagtagcatgttaaacaactcaaacaagcaaattatgactatcaaatacttaatcaaccaaacctcactttctacatagtcaactttgtccatc 161531  T
Q  188 aaccttgccctccaaacctcttc 210  Q
    |||||||||||| ||||||||||    
T  161532 aaccttgccctctaaacctcttc 161554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 19582039 - 19581960
Alignment:
Q  47 attgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaa 126  Q
    ||||| ||||||||||||  |||||||||||  |  ||| |||||||||||| |||||||||||| ||||||||||||||    
T  19582039 attgaaaacctcttttcattacaacattacagagacttgacacaatacaataacattttaaacaattcaatcaaacaaaa 19581960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 38149341 - 38149406
Alignment:
Q  142 cttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctc 207  Q
    |||||||| || || |||||||  || |||||||||||| ||||||||||||||||||||||||||    
T  38149341 cttaatcaccccaatctcactttttatacaatcaactttgtccatcaaccttgccctccaaacctc 38149406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 203
Target Start/End: Original strand, 7744707 - 7744778
Alignment:
Q  132 ctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaa 203  Q
    ||||||| | |||||| |||||||||||| |||||| |  ||||||||| |||||||||||  |||||||||    
T  7744707 ctatcaaaaacttaataaacctaagctcaattcctaaagtatcaactttgtccatcaacctcaccctccaaa 7744778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 11022280 - 11022252
Alignment:
Q  182 tccatcaaccttgccctccaaacctcttc 210  Q
    |||||||||||||||||||||||||||||    
T  11022280 tccatcaaccttgccctccaaacctcttc 11022252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 31 - 235
Target Start/End: Complemental strand, 7372140 - 7371935
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    ||||||| ||||||||||||||||||||||||||  ||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||    
T  7372140 aaggtttgattcattcattgacaacctcttttcattacaacattacatggacttggcacaatacaataccattttaaacaactcaatcaaacaaaatact 7372041  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatccttt-gct 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  7372040 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccttatcctttggct 7371941  T
Q  230 tctcca 235  Q
    ||||||    
T  7371940 tctcca 7371935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 31 - 235
Target Start/End: Complemental strand, 32438237 - 32438034
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    ||||||| |||||||||||||||| |||||||||  ||||||||||||||  |||||||||| |||||||||||||||||||||| ||||||||||||||    
T  32438237 aaggtttgattcattcattgacaatctcttttcattacaacattacatggacttggcacaatgcaatagcattttaaacaactcagtcaaacaaaatact 32438138  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatcctttgctt 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||| | |||||||    
T  32438137 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacc-cttctttgcccctagcatttgctt 32438039  T
Q  231 ctcca 235  Q
    |||||    
T  32438038 ctcca 32438034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 40 - 235
Target Start/End: Original strand, 32517847 - 32518043
Alignment:
Q  40 ttcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaat 139  Q
    |||| ||||||||||||||||||||  ||||||||||||||  ||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  32517847 ttcagtcattgacaacctcttttcattacaacattacatggacttgacacaatacaataacattttaaacaactcaatcaaacaaaatactcatatcaat 32517946  T
Q  140 atcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatccttt-gcttctcca 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||| |||||||||    
T  32517947 atcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctttgcccatatcctttggcttctcca 32518043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 31 - 203
Target Start/End: Original strand, 20524354 - 20524526
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    ||||||| ||||||||||||||||||||||||||  |||||||||||||   ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  20524354 aaggtttgattcattcattgacaacctcttttcattacaacattacatgaacttggcacaatacaatagcattttaaacaactcaataaaacaaaatact 20524453  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaa 203  Q
    | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20524454 catatcaatatcataatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaa 20524526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 67 - 220
Target Start/End: Original strand, 18644284 - 18644437
Alignment:
Q  67 acaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaatatcttaatcaacctaagctcacttcct 166  Q
    |||||||||||  |  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18644284 acaacattacacagacttggcacaatacaatagcattttaaacaactcagtcaaacaaaatactcctatcaatatcttaatcaacctaagttcacttcct 18644383  T
Q  167 acacaatcaactttatccatcaaccttgccctccaaacctcttctctcccccta 220  Q
    || |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18644384 actcaatcaactttatccatcaaccttgccctccaaacctcttctctgccccta 18644437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 39 - 228
Target Start/End: Complemental strand, 33268027 - 33267838
Alignment:
Q  39 attcattcattgacaacctcttttcaagacaacattacatggga-ttggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcctatca 137  Q
    ||||||||||||||||||||||||||  |||||||||||   || |||||||||||||||| ||||||||||| |||| ||||||||| |||||||||||    
T  33268027 attcattcattgacaacctcttttcattacaacattacaacagacttggcacaatacaataacattttaaacagctcattcaaacaaattactcctatca 33267928  T
Q  138 atatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatcctttgc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | |||| || |||||||||||    
T  33267927 atatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgacc-ccaaacctatactctgccactatcctttgc 33267838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 83 - 235
Target Start/End: Original strand, 9399137 - 9399290
Alignment:
Q  83 ttggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttat 182  Q
    ||||||||||| |||| |||| |||||||||||| ||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9399137 ttggcacaataaaataacattctaaacaactcaaacaaacaaatcactcctatcaatatcttaatcaacctaagctcatttcctacacaatcaactttat 9399236  T
Q  183 ccatcaaccttgccctccaaacctcttctctccccctatccttt-gcttctcca 235  Q
    |||||||| ||||| |||||||||||||||| || ||||||||| |||||||||    
T  9399237 ccatcaactttgccttccaaacctcttctctgccactatcctttggcttctcca 9399290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 67 - 177
Target Start/End: Original strand, 11356211 - 11356321
Alignment:
Q  67 acaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaatatcttaatcaacctaagctcacttcct 166  Q
    |||||||||||||   ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||    
T  11356211 acaacattacatgaacttggcacaatagaatagcattttaaacaactcaatcaaacaaaatacttctatcaatatcgtaatcaacctaagctgacttcct 11356310  T
Q  167 acacaatcaac 177  Q
    |||||||||||    
T  11356311 acacaatcaac 11356321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 39 - 126
Target Start/End: Original strand, 10569375 - 10569462
Alignment:
Q  39 attcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaa 126  Q
    ||||||||||||||||||||||||||  |||||||||||| |  |||||||||||||||| |||||||||||||||||||||||||||    
T  10569375 attcattcattgacaacctcttttcattacaacattacatagacttggcacaatacaataacattttaaacaactcaatcaaacaaaa 10569462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 39 - 126
Target Start/End: Original strand, 7050734 - 7050821
Alignment:
Q  39 attcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaa 126  Q
    |||||| |||||||||||||||||||  |||||||||||  |  |||||||||||||||| |||||||||||||||||||||||||||    
T  7050734 attcatccattgacaacctcttttcattacaacattacacagacttggcacaatacaataacattttaaacaactcaatcaaacaaaa 7050821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 126
Target Start/End: Original strand, 6902125 - 6902212
Alignment:
Q  39 attcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaa 126  Q
    ||||||||||||||||||||||||||  ||||||||||   |  ||| |||||||||||| | |||||||||||||||||| ||||||    
T  6902125 attcattcattgacaacctcttttcattacaacattacgcagacttgacacaatacaataactttttaaacaactcaatcacacaaaa 6902212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 17935548 - 17935616
Alignment:
Q  142 cttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttc 210  Q
    |||||||||||||||||||| |||||| || |||||||| ||| |||||||| ||||||||| ||||||    
T  17935548 cttaatcaacctaagctcacatcctactcagtcaactttgtccctcaaccttaccctccaaaactcttc 17935616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 11356316 - 11356367
Alignment:
Q  185 atcaaccttgccctccaaacctcttctctccccctatccttt-gcttctcca 235  Q
    ||||||||||||||||||||||||||||| |||||||| ||| |||||||||    
T  11356316 atcaaccttgccctccaaacctcttctctgcccctatcatttggcttctcca 11356367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 31 - 235
Target Start/End: Complemental strand, 41760884 - 41760679
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    ||||||| ||||||||||||||||||||||||||  ||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41760884 aaggtttgattcattcattgacaacctcttttcattacaacattacatggacttggcacaatacaatagcattttcaacaactcaatcaaacaaaatact 41760785  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatccttt-gct 229  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  41760784 catatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatcctttggct 41760685  T
Q  230 tctcca 235  Q
    ||||||    
T  41760684 tctcca 41760679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 31 - 235
Target Start/End: Complemental strand, 11255087 - 11254882
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    ||||||| ||||||||||||||||||||||||||  ||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11255087 aaggtttgattcattcattgacaacctcttttcattacaacattacatggacttggcacaatataatagcattttaaacaactcaatcaaacaaaatact 11254988  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatccttt-gct 229  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  11254987 cctatcaatatcttaatcaacctaagctcacttcctacacaattaactttatccaacaaccttgccctccaaacctcttctctccccctatcctttggct 11254888  T
Q  230 tctcca 235  Q
    ||||||    
T  11254887 tctcca 11254882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 33 - 228
Target Start/End: Complemental strand, 35402823 - 35402628
Alignment:
Q  33 ggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcc 132  Q
    ||||| ||||||||||||||||||||||||||  ||||||||||| ||  |||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  35402823 ggtttgattcattcattgacaacctcttttcattacaacattacacggacttggcacagtacaatagcattttaaacaactcaatcaaaaaaaatactcc 35402724  T
Q  133 tatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatcctttgc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35402723 tatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctgcccctatcctttgc 35402628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 33 - 235
Target Start/End: Original strand, 49524101 - 49524304
Alignment:
Q  33 ggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcc 132  Q
    ||||| ||||||||||||||||||||||||||  |||||||||||||   ||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  49524101 ggtttgattcattcattgacaacctcttttcattacaacattacatgaacttggcacaatacaataatattttaaacaactcaatcaaacaaaatactcc 49524200  T
Q  133 tatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatccttt-gcttc 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  49524201 tatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctgcccctatcctttggcttc 49524300  T
Q  232 tcca 235  Q
    ||||    
T  49524301 tcca 49524304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 31 - 235
Target Start/End: Original strand, 51012894 - 51013099
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    ||||||| ||||||||||||||||||||||||||  ||||||||||||||  |||||||||||||||||||||||||||||| || ||||||||||||||    
T  51012894 aaggtttgattcattcattgacaacctcttttcattacaacattacatggacttggcacaatacaatagcattttaaacaacccagtcaaacaaaatact 51012993  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatccttt-gct 229  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||    
T  51012994 cctatcaatatcttaatcaacctaagcttacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctgcccctatcatttggct 51013093  T
Q  230 tctcca 235  Q
    ||||||    
T  51013094 tctcca 51013099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 31 - 203
Target Start/End: Original strand, 43520405 - 43520577
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    |||||||  |||||||||||||||||||||||||  ||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||    
T  43520405 aaggtttggttcattcattgacaacctcttttcattacaacattacatggacttggcacaatacaatatcattttaaacaactcaatcaaacaaaatact 43520504  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaa 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  43520505 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttattcatcaaccttgtcctccaaa 43520577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 39 - 235
Target Start/End: Complemental strand, 2692435 - 2692238
Alignment:
Q  39 attcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaa 138  Q
    |||||||| ||||||||||||||| |  |||||||||||  |  |||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||    
T  2692435 attcattcgttgacaacctcttttaattacaacattacagagacttggcacaatacaataacattttaaacaacttaatcaaacaaattactcctatcaa 2692336  T
Q  139 tatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatccttt-gcttctcca 235  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||    
T  2692335 tatcttaatcaacctaagctgacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctgccactatcctttagcttctcca 2692238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 31 - 187
Target Start/End: Original strand, 42981587 - 42981743
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    ||||||| |||||||||| |||||||||||||||  |||||| ||||||   |||||||||||||||| |||||||||||||||||| ||||||||||||    
T  42981587 aaggtttgattcattcatcgacaacctcttttcattacaacaatacatgaacttggcacaatacaataacattttaaacaactcaatgaaacaaaatact 42981686  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatc 187  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  42981687 cctatcaatatcttaatcaatctaagctcatttcctacacaatcaactttatccatc 42981743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 87 - 211
Target Start/End: Original strand, 11641112 - 11641236
Alignment:
Q  87 cacaatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccat 186  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  11641112 cacaatacaataacattttaaacaactcaatcaaacaaattactcctatcaacatcttaatcaacctaagttcacttcctacacaatcaactttatccat 11641211  T
Q  187 caaccttgccctccaaacctcttct 211  Q
    |||||||||||||||| ||||||||    
T  11641212 caaccttgccctccaatcctcttct 11641236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 31 - 147
Target Start/End: Complemental strand, 834212 - 834096
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    ||||||| ||||||||||||||||||| ||||||  ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  834212 aaggtttgattcattcattgacaaccttttttcattacaacattacatggacttggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 834113  T
Q  131 cctatcaatatcttaat 147  Q
    |||||||||| ||||||    
T  834112 cctatcaataacttaat 834096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 31 - 147
Target Start/End: Original strand, 5438747 - 5438863
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    ||||||| ||||||||||||||||||| ||||||  ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5438747 aaggtttgattcattcattgacaaccttttttcattacaacattacatggacttggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 5438846  T
Q  131 cctatcaatatcttaat 147  Q
    |||||||||| ||||||    
T  5438847 cctatcaataacttaat 5438863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 149 - 235
Target Start/End: Complemental strand, 41760638 - 41760552
Alignment:
Q  149 aacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatccttt-gcttctcca 235  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  41760638 aacctaagctcacttcctacccaatcaactttatgcatcaaccttgccctccaaacctcttctct-cccctatcctttggcttctcca 41760552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 126
Target Start/End: Complemental strand, 48645896 - 48645809
Alignment:
Q  39 attcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaa 126  Q
    ||||||| ||||||||||||||||||  |||||||||||| |  |||||||||||||||| |||||||||||||||||||||||||||    
T  48645896 attcatttattgacaacctcttttcattacaacattacatagacttggcacaatacaataacattttaaacaactcaatcaaacaaaa 48645809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 39 - 126
Target Start/End: Original strand, 54387116 - 54387203
Alignment:
Q  39 attcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaa 126  Q
    ||||||||||||||||||||||||||  |||||||||||  |  |||||||||||||||| |||||||||||||||||||| ||||||    
T  54387116 attcattcattgacaacctcttttcattacaacattacacagacttggcacaatacaataacattttaaacaactcaatcacacaaaa 54387203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 32652936 - 32653001
Alignment:
Q  142 cttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctc 207  Q
    |||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  32652936 cttaatcaccctaagctcacttcctatacaatcaactttttccatcaaccttgccctccaaacctc 32653001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 88 - 210
Target Start/End: Complemental strand, 28101606 - 28101484
Alignment:
Q  88 acaatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatc 187  Q
    ||||||||||||||| ||||||||||||| || | | | ||   |||||||   ||||||||||||||| ||| || ||||||| |||||||| ||||||    
T  28101606 acaatacaatagcatgttaaacaactcaaacagatatattatgactatcaaatacttaatcaacctaagttcattttctacacagtcaactttgtccatc 28101507  T
Q  188 aaccttgccctccaaacctcttc 210  Q
     ||||||||||||||||||||||    
T  28101506 gaccttgccctccaaacctcttc 28101484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 4614587 - 4614655
Alignment:
Q  142 cttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttc 210  Q
    |||||||||| ||||||||||||||||| | |||||||| |||||||||| ||||||||||||||||||    
T  4614587 cttaatcaacttaagctcacttcctacatagtcaactttgtccatcaaccatgccctccaaacctcttc 4614655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 210
Target Start/End: Original strand, 7150446 - 7150559
Alignment:
Q  97 tagcattttaaacaactcaatcaaacaaaatactcctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgcc 196  Q
    |||||| |||||||||||||  || |||| ||   |||||||   |||||||||||||| |||||||| |||| | |||||||| |||||||||||||||    
T  7150446 tagcatgttaaacaactcaaaaaaccaaattatgactatcaaatacttaatcaacctaacctcacttcttacatagtcaactttgtccatcaaccttgcc 7150545  T
Q  197 ctccaaacctcttc 210  Q
    ||| ||||||||||    
T  7150546 ctctaaacctcttc 7150559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 27385571 - 27385626
Alignment:
Q  155 agctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttc 210  Q
    |||||| |||||| |||||||||||| ||||||||||||| | |||||||||||||    
T  27385571 agctcagttcctatacaatcaactttgtccatcaaccttgtcttccaaacctcttc 27385626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 207
Target Start/End: Complemental strand, 13449624 - 13449570
Alignment:
Q  153 taagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctc 207  Q
    |||||||||||| ||  ||||||||||| ||||||||| ||||||||||||||||    
T  13449624 taagctcacttcatatgcaatcaactttgtccatcaactttgccctccaaacctc 13449570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 10544180 - 10544232
Alignment:
Q  142 cttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttg 194  Q
    |||||| || |||||||||||  |||||||||||||||| |||||||| ||||    
T  10544180 cttaatgaatctaagctcactatctacacaatcaactttctccatcaatcttg 10544232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 31 - 235
Target Start/End: Original strand, 17516296 - 17516500
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    ||||||| ||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  17516296 aaggtttgattcattcattgacaacctcttttcattacaacattacatggaattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 17516395  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatccttt-gct 229  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||    
T  17516396 tctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccc-atcctttggct 17516494  T
Q  230 tctcca 235  Q
    ||||||    
T  17516495 tctcca 17516500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 31 - 235
Target Start/End: Complemental strand, 30599365 - 30599160
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    ||||||| ||||||||||||||||||||||||||  ||||||||||||||  |||||||||||||||| |||||||||||||||||| ||||||||||||    
T  30599365 aaggtttgattcattcattgacaacctcttttcattacaacattacatggacttggcacaatacaataacattttaaacaactcaatgaaacaaaatact 30599266  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatcctttg-ct 229  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  30599265 catatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatcctttgact 30599166  T
Q  230 tctcca 235  Q
    ||||||    
T  30599165 tctcca 30599160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 34 - 235
Target Start/End: Original strand, 46198709 - 46198911
Alignment:
Q  34 gttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcct 133  Q
    |||| ||||||||||||||||||||||||||  ||||||||||||||  ||| ||||||| |||| ||||||||||||||||||||||||||||||||||    
T  46198709 gtttgattcattcattgacaacctcttttcattacaacattacatggacttgacacaatataataacattttaaacaactcaatcaaacaaaatactcct 46198808  T
Q  134 atcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatcctttg-cttct 232  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  46198809 atcaatatcttaatcaacctaagtccacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatcctttgacttct 46198908  T
Q  233 cca 235  Q
    |||    
T  46198909 cca 46198911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 31 - 235
Target Start/End: Complemental strand, 44275375 - 44275170
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    ||||||| ||||||||||||||||||||||||||  |||||||||||||   |||||||||||||||| |||||||||||||||||||||||||||||||    
T  44275375 aaggtttgattcattcattgacaacctcttttcattacaacattacatgaacttggcacaatacaataccattttaaacaactcaatcaaacaaaatact 44275276  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatccttt-gct 229  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  44275275 cctatcaatatcttaatcaacctaagctcccttccttcacaatcaaatttatccatcaaccttgccctccaaacgtcttctctccccctatcctttggct 44275176  T
Q  230 tctcca 235  Q
    ||||||    
T  44275175 tctcca 44275170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 33 - 228
Target Start/End: Complemental strand, 27898269 - 27898075
Alignment:
Q  33 ggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcc 132  Q
    ||||| ||||||||||||||||||||||||||  ||||||||||||||  |||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  27898269 ggtttgattcattcattgacaacctcttttcattacaacattacatggacttggcacaat-caatagcattttaaacaacttaatcaaacaaaatactcc 27898171  T
Q  133 tatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatcctttgc 228  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  27898170 tatcaatatattaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctgcccctatcatttgc 27898075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 31 - 235
Target Start/End: Complemental strand, 53188857 - 53188652
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    ||||||| ||||||||||||||||||| ||||||  ||||||||||||||  |||||||||||||||| |||||||||||||||| ||||||||||||||    
T  53188857 aaggtttcattcattcattgacaacctattttcattacaacattacatggacttggcacaatacaataacattttaaacaactcagtcaaacaaaatact 53188758  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatccttt-gct 229  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||| |||    
T  53188757 cctatcaatatcttaatcaatctaagctcacttcctacacaatcaactttatccatcaactttgccctccaaacctcttctctgcccctatcatttggct 53188658  T
Q  230 tctcca 235  Q
    ||||||    
T  53188657 tctcca 53188652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 31 - 235
Target Start/End: Original strand, 21349681 - 21349886
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    ||||||| ||||||||||||||||||||||||||  ||||||||||||||  ||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  21349681 aaggtttgattcattcattgacaacctcttttcattacaacattacatggacttggcgcaatagaatagcattttaaacaactcaatcaaacaaaatact 21349780  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatccttt-gct 229  Q
    | ||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||| |||    
T  21349781 catatcaatgtcttaatcaacataagctcacttcctacacaatcaactttattcatcaaccttgccctcaaaacttcttctctccccctatcctttggct 21349880  T
Q  230 tctcca 235  Q
    ||||||    
T  21349881 tctcca 21349886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 31 - 235
Target Start/End: Original strand, 43766108 - 43766313
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    ||||||| ||||||||||||||||||||||||||  ||||  |||||||   ||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  43766108 aaggtttgattcattcattgacaacctcttttcattacaatgttacatgaacttgacacaataaaatagcattttaaacaactcaatcaaacaaaatact 43766207  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatccttt-gct 229  Q
    ||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  43766208 cctatcaatatattaatcaatctaagctcacttcctacacaatcagctttatccatcaaccttgccctccaaacctcttctctccccctatcctttggct 43766307  T
Q  230 tctcca 235  Q
    ||||||    
T  43766308 tctcca 43766313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 31 - 235
Target Start/End: Original strand, 54899420 - 54899633
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaa--------cattacatgggattggcacaatacaatagcattttaaacaactcaatcaaac 122  Q
    ||||||| ||||||||||||||||||||||||||  ||||        ||||||||||  ||||||||||||||||||||||||||||||||| ||||||    
T  54899420 aaggtttgattcattcattgacaacctcttttcattacaacattacaacattacatggacttggcacaatacaatagcattttaaacaactcagtcaaac 54899519  T
Q  123 aaaatactcctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatc 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||    
T  54899520 aaaatactcctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttacccatcaaccttgccctccaaacctcttctctgcccttatc 54899619  T
Q  223 cttt-gcttctcca 235  Q
     ||| |||||||||    
T  54899620 atttggcttctcca 54899633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 31 - 203
Target Start/End: Original strand, 2661201 - 2661373
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    |||||||  |||||||||||||||||||||||||  ||||||||||||||   ||||||||||||||| ||||||||||||||||||||||||||||||     
T  2661201 aaggtttggttcattcattgacaacctcttttcattacaacattacatggacatggcacaatacaatatcattttaaacaactcaatcaaacaaaatacc 2661300  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaa 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2661301 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgtcctccaaa 2661373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 40 - 203
Target Start/End: Original strand, 44795195 - 44795358
Alignment:
Q  40 ttcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaat 139  Q
    ||||||||| |||||||||||||||  ||||||||||||||  |||||| |||||||||  |||||||||||||||||||||||||||||||||||||||    
T  44795195 ttcattcatcgacaacctcttttcattacaacattacatggacttggcataatacaatattattttaaacaactcaatcaaacaaaatactcctatcaat 44795294  T
Q  140 atcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaa 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44795295 atcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgtcctccaaa 44795358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 39 - 213
Target Start/End: Original strand, 610589 - 610763
Alignment:
Q  39 attcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaa 138  Q
    ||||||||||||||||||||||||||  |||||||||||     |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  610589 attcattcattgacaacctcttttcattacaacattacacatacttggcacaatacaataacattttaaacaactcaatcaaacaaattactcctatcaa 610688  T
Q  139 tatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctct 213  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  610689 tatcttaataaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaagccttttctct 610763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 51 - 227
Target Start/End: Original strand, 2377998 - 2378172
Alignment:
Q  51 acaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaatatcttaatcaa 150  Q
    ||||||||||||||  ||||||||||||||  |||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2377998 acaacctcttttcattacaacattacatggacttggcacaat-caataacattttaaacaactcaatcaaa-aaaatactcctatcaatatcttaatcaa 2378095  T
Q  151 cctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatcctttg 227  Q
    |||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  2378096 cctaagctcatttcctacgcaatcaactttatccatcaaccttgctctccaaacctcttctctgcccctatcctttg 2378172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 87 - 228
Target Start/End: Complemental strand, 35904850 - 35904709
Alignment:
Q  87 cacaatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccat 186  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35904850 cacaatacaataacattttaaacaactcagtcaaacaaaatactcctatcaatatcttaatcaacctaaactcacttcctacacaatcaactttatccat 35904751  T
Q  187 caaccttgccctccaaacctcttctctccccctatcctttgc 228  Q
    |||||||||||||||||||| |||||| |||||||| |||||    
T  35904750 caaccttgccctccaaacctgttctctgcccctatcgtttgc 35904709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 39 - 212
Target Start/End: Original strand, 46113462 - 46113635
Alignment:
Q  39 attcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaa 138  Q
    |||||||| |||||||||||||||||  |||||||||||  |  ||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  46113462 attcattccttgacaacctcttttcattacaacattacacagacttgacacaatacaataacattttaaacaactcaatcaaacaaattactcctatcaa 46113561  T
Q  139 tatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctc 212  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||| |||||||||    
T  46113562 tatcttaatcaacctaagctcacttcccgcacaatcaactttatccatcagccttgccctccaagcctcttctc 46113635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 34 - 187
Target Start/End: Complemental strand, 2225326 - 2225165
Alignment:
Q  34 gttttattcattcattgacaacctcttttcaagacaacat--------tacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaa 125  Q
    |||| ||||||||||||||||||||||||||  |||||||        |||||||  |||||||||||||||| |||||||||||||||| |||| ||||    
T  2225326 gtttgattcattcattgacaacctcttttcattacaacattacaacattacatggacttggcacaatacaataacattttaaacaactcagtcaagcaaa 2225227  T
Q  126 atactcctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatc 187  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2225226 atactcctatcaatatattaatcaacctaagctcacttcctacacaatcaactttatccatc 2225165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 39 - 209
Target Start/End: Original strand, 13466154 - 13466324
Alignment:
Q  39 attcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaa 138  Q
    |||||||||||  |||||||||||||  |||||||||||     || ||| |||||| |||||| ||||||||  |||||||||||| ||| ||||||||    
T  13466154 attcattcattttcaacctcttttcattacaacattacacaaacttagcataatacagtagcatgttaaacaatccaatcaaacaaattacacctatcaa 13466253  T
Q  139 -tatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctctt 209  Q
     ||| ||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||| ||||||    
T  13466254 atat-ttaatcaacctaaactcacttcctacacaatcaactttgtccatcaacctttccctccaatcctctt 13466324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 125
Target Start/End: Complemental strand, 23292323 - 23292232
Alignment:
Q  34 gttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaa 125  Q
    |||| ||||||||||||||||||| ||||||  ||||||||| ||||  ||| |||||||||||||||||||||||||||||||||||||||    
T  23292323 gtttgattcattcattgacaacctattttcattacaacattatatggacttgtcacaatacaatagcattttaaacaactcaatcaaacaaa 23292232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 39 - 126
Target Start/End: Complemental strand, 48829973 - 48829886
Alignment:
Q  39 attcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaa 126  Q
    |||||||||||||||||| |||||||  |||||||||||  |  |||||||||||||||| |||||||||||||||||||||||||||    
T  48829973 attcattcattgacaaccacttttcattacaacattacacagacttggcacaatacaataacattttaaacaactcaatcaaacaaaa 48829886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 32843504 - 32843436
Alignment:
Q  142 cttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttc 210  Q
    |||||||||||||||||||| ||||||||| |||||||| || ||||||||||||||||||| ||||||    
T  32843504 cttaatcaacctaagctcacatcctacacagtcaactttgtcgatcaaccttgccctccaaaactcttc 32843436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 23876287 - 23876220
Alignment:
Q  143 ttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttc 210  Q
    ||||||||||||| |||||||| |||| | |||||||| |||||||||||||||||||||||||||||    
T  23876287 ttaatcaacctaaactcacttcatacagagtcaactttgtccatcaaccttgccctccaaacctcttc 23876220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 126
Target Start/End: Original strand, 51685586 - 51685673
Alignment:
Q  39 attcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaa 126  Q
    ||||||||||||||||||||||||||  |||||||||||  |  ||| |||||||||||| ||||| |||||||||||||| ||||||    
T  51685586 attcattcattgacaacctcttttcattacaacattacacagacttgacacaatacaataacatttcaaacaactcaatcacacaaaa 51685673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 41945414 - 41945479
Alignment:
Q  142 cttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctc 207  Q
    |||||||| ||||||||||||||||| |||||||||||| ||||||||||||| |||| |||||||    
T  41945414 cttaatcaccctaagctcacttcctatacaatcaactttgtccatcaaccttgtcctctaaacctc 41945479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 35862508 - 35862440
Alignment:
Q  142 cttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttc 210  Q
    |||||||||| ||||||| |||||||||||||||||||| | ||||||||||||| | |||||||||||    
T  35862508 cttaatcaacttaagctcgcttcctacacaatcaactttgttcatcaaccttgccatgcaaacctcttc 35862440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 2976410 - 2976359
Alignment:
Q  142 cttaatcaacctaagctcacttcctacacaatcaactttatccatcaacctt 193  Q
    ||||||||||||||||||| |||||||||| |||||||| ||||||||||||    
T  2976410 cttaatcaacctaagctcaattcctacacactcaactttgtccatcaacctt 2976359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 49495139 - 49495067
Alignment:
Q  132 ctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaac 204  Q
    ||||||| | ||||||||||||||||||| |||||| |  ||||||||| |||||| ||||  ||||||||||    
T  49495139 ctatcaaaaacttaatcaacctaagctcagttcctaaaatatcaactttgtccatctacctcaccctccaaac 49495067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 77
Target Start/End: Original strand, 42280483 - 42280521
Alignment:
Q  39 attcattcattgacaacctcttttcaagacaacattaca 77  Q
    ||||||||||||||||||||||||||  |||||||||||    
T  42280483 attcattcattgacaacctcttttcattacaacattaca 42280521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 35904882 - 35904849
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttca 64  Q
    ||||||| ||||||||||||||||||||||||||    
T  35904882 aaggtttgattcattcattgacaacctcttttca 35904849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 34 - 228
Target Start/End: Complemental strand, 41041739 - 41041545
Alignment:
Q  34 gttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcct 133  Q
    |||| ||||||||||||||||||||||||||  ||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  41041739 gtttgattcattcattgacaacctcttttcattacaacattacatggacttggcaaaatacaatagcattttaaacaactcaatcaaacaaaatactcct 41041640  T
Q  134 atcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatcctttgc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  41041639 atcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgcccttcaaacctcttctctccccctatcctttgc 41041545  T

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Target: chr8; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 31 - 227
Target Start/End: Original strand, 15307259 - 15307455
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    ||||||| ||||||||||||||||||||||||||  ||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||    
T  15307259 aaggtttgattcattcattgacaacctcttttcattacaacattacatggacttggcacaatacaataacattttaaacaactcaatcaaacaaaatact 15307358  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatcctttg 227  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  15307359 cctatcaataacttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctgcccctatcatttg 15307455  T

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Target: chr8; HSP #3
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 31 - 227
Target Start/End: Original strand, 15487628 - 15487824
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    ||||||| ||||||||||||||||||||||||||  ||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||    
T  15487628 aaggtttgattcattcattgacaacctcttttcattacaacattacatggacttggcacaatacaataacattttaaacaactcaatcaaacaaaatact 15487727  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatcctttg 227  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  15487728 cctatcaataacttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctgcccctatcatttg 15487824  T

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Target: chr8; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 33 - 227
Target Start/End: Original strand, 5037405 - 5037599
Alignment:
Q  33 ggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcc 132  Q
    ||||| ||||||||||||||||||||||||||  ||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5037405 ggtttgattcattcattgacaacctcttttcattacaacattacatggacttgacacaatacaatagcattttaaacaactcaatcaaacaaaatactcc 5037504  T
Q  133 tatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatcctttg 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||| ||||    
T  5037505 tatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatcgatcaaccttgccttccaaacctcttctcttcccctatcatttg 5037599  T

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Target: chr8; HSP #5
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 31 - 227
Target Start/End: Complemental strand, 27405300 - 27405104
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    ||||||| ||||||||||||||||||| ||||||  ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27405300 aaggtttgattcattcattgacaaccttttttcattacaacattacatggacttggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 27405201  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatcctttg 227  Q
    |||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  27405200 cctatcaataacttaatcaacctaagttcacttcctagacaatcaactttatccatcaaccttgccctccaaacctcttctctgcccctatcatttg 27405104  T

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Target: chr8; HSP #6
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 31 - 227
Target Start/End: Original strand, 29238161 - 29238357
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    ||||||| ||||||||||||||||||||||||||  ||||||||||||||  ||| |||||||||||||||||||||| ||||||| |||||||||||||    
T  29238161 aaggtttgattcattcattgacaacctcttttcattacaacattacatggacttgacacaatacaatagcattttaaataactcaaccaaacaaaatact 29238260  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatcctttg 227  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||| ||||    
T  29238261 cctatcaataacttaatcaacctaagcttacttcctacacaatcaactttatccaccaaccttgcccttcaaacctcttctctgcccctatcatttg 29238357  T

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Target: chr8; HSP #7
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 31 - 203
Target Start/End: Original strand, 27692133 - 27692305
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    |||||||  |||||||||||||||||||||||||  ||||||||||||||  |||||||||||||||| |||||| ||||||||||||||||||||||||    
T  27692133 aaggtttggttcattcattgacaacctcttttcattacaacattacatggacttggcacaatacaatatcatttttaacaactcaatcaaacaaaatact 27692232  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaa 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27692233 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgtcctccaaa 27692305  T

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Target: chr8; HSP #8
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 31 - 224
Target Start/End: Complemental strand, 40338837 - 40338637
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    ||||||| ||||||||||||||||||||||||||  ||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40338837 aaggtttgattcattcattgacaacctcttttcattacaacattaca-ggacttggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 40338739  T
Q  131 cctatcaatatcttaatcaacctaagctcactt--------cctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatc 222  Q
    ||||||||||||||||||| |||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40338738 cctatcaatatcttaatcagcctaagctcacttcctaacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccgtatc 40338639  T
Q  223 ct 224  Q
    ||    
T  40338638 ct 40338637  T

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Target: chr8; HSP #9
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 31 - 203
Target Start/End: Complemental strand, 33707967 - 33707795
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    |||||||  |||||||||||||||||||||||||  |||||||||||| |  |||||||||||||||| |||||||||||||||||||||||||||||||    
T  33707967 aaggtttggttcattcattgacaacctcttttcattacaacattacatagacttggcacaatacaatatcattttaaacaactcaatcaaacaaaatact 33707868  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaa 203  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33707867 tctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgtcctccaaa 33707795  T

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Target: chr8; HSP #10
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 31 - 211
Target Start/End: Complemental strand, 13485294 - 13485114
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    ||||||| ||||||||||||||||||||||||||  ||||||||||||||  |||| ||||||||||||||||||||||||||||||| || ||||||||    
T  13485294 aaggtttgattcattcattgacaacctcttttcattacaacattacatggacttggtacaatacaatagcattttaaacaactcaatcgaataaaatact 13485195  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttct 211  Q
    | ||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13485194 catatcaatatcttaatcaacataagttcgcttcctacacaatcaactttatccatcaaccttgccctccaaaccttttct 13485114  T

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Target: chr8; HSP #11
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 87 - 235
Target Start/End: Complemental strand, 3152632 - 3152483
Alignment:
Q  87 cacaatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccat 186  Q
    ||||||| |||| |||||||||| ||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  3152632 cacaataaaataacattttaaacgacttaatcaaacaaattactcctatcaatattttaatcaacctaagctcacttcctatacaatcaactttatccat 3152533  T
Q  187 caaccttgccctccaaacctcttctctccccctatccttt-gcttctcca 235  Q
    |||||||||||||||| ||||||||||  | ||||||||| |||||||||    
T  3152532 caaccttgccctccaagcctcttctctaacactatcctttggcttctcca 3152483  T

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Target: chr8; HSP #12
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 39 - 225
Target Start/End: Complemental strand, 11720525 - 11720339
Alignment:
Q  39 attcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaa 138  Q
    |||||||||||  |||||||||||||  |||| ||||||  | ||| |||||||||| |||||| |||||||||| || |||||||| ||||||||| ||    
T  11720525 attcattcattttcaacctcttttcattacaatattacacagaattagcacaatacagtagcatgttaaacaacttaaacaaacaaattactcctattaa 11720426  T
Q  139 tatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatcctt 225  Q
       |||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||| ||||||||||| || || ||||||||    
T  11720425 atacttaatcaacctaagctcacttcctacacagtcaactttgtccatcaaccttgtccttcaaacctcttcactgccactatcctt 11720339  T

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Target: chr8; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 31 - 125
Target Start/End: Original strand, 42942761 - 42942855
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaa 125  Q
    ||||||| ||||||||||||||||||||||||||  ||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||    
T  42942761 aaggtttgattcattcattgacaacctcttttcattacaacattacatggacttggcacaatacaataacattttaaacaactcaatcaaacaaa 42942855  T

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Target: chr8; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 88 - 207
Target Start/End: Complemental strand, 12516006 - 12515887
Alignment:
Q  88 acaatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatc 187  Q
    ||||||||||||||| ||||| ||||||| ||| |||| ||   |||| || | |||||||||||||||||||||||| | |||||||||||| ||||||    
T  12516006 acaatacaatagcatgttaaaaaactcaaacaagcaaattatgactattaaaaacttaatcaacctaagctcacttcccatacaatcaactttgtccatc 12515907  T
Q  188 aaccttgccctccaaacctc 207  Q
    ||| || |||||||||||||    
T  12515906 aacatttccctccaaacctc 12515887  T

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Target: chr8; HSP #15
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 39 - 126
Target Start/End: Complemental strand, 41824820 - 41824733
Alignment:
Q  39 attcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaa 126  Q
    |||||||||||| |||||||||||||  |||||||||||  || |||||||||||||||| |||||||||||||||||||| ||||||    
T  41824820 attcattcattggcaacctcttttcattacaacattacacaggcttggcacaatacaataacattttaaacaactcaatcacacaaaa 41824733  T

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Target: chr8; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 126
Target Start/End: Complemental strand, 7744280 - 7744193
Alignment:
Q  39 attcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaa 126  Q
    ||||||||||||||| ||||||||||  ||||||||| |  |  |||||||||||||||| |||||||||||||||||||| ||||||    
T  7744280 attcattcattgacagcctcttttcattacaacattatacagacttggcacaatacaataacattttaaacaactcaatcacacaaaa 7744193  T

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Target: chr8; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 126
Target Start/End: Complemental strand, 26239591 - 26239504
Alignment:
Q  39 attcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaa 126  Q
    ||||||||||||||||||||||||||  |||||||||||  |  |||  ||||||||||| |||||||||||||||||||| ||||||    
T  26239591 attcattcattgacaacctcttttcattacaacattacacagacttgatacaatacaataacattttaaacaactcaatcacacaaaa 26239504  T

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Target: chr8; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 22273270 - 22273328
Alignment:
Q  67 acaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaa 125  Q
    ||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||    
T  22273270 acaacattacatggacttgacacaatacaatagcattttaaacaactcaatcaaacaaa 22273328  T

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Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 28433004 - 28432939
Alignment:
Q  142 cttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctc 207  Q
    |||||||| ||| |||||||||| || ||||||||||||  |||||||||||||||||||||||||    
T  28433004 cttaatcaccctcagctcacttcttatacaatcaactttgcccatcaaccttgccctccaaacctc 28432939  T

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Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 25371304 - 25371236
Alignment:
Q  142 cttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttc 210  Q
    |||| |||||||||| |||||||||||||| |||||||| |||||||| ||||| |||||||| |||||    
T  25371304 cttattcaacctaagttcacttcctacacactcaactttgtccatcaatcttgctctccaaacatcttc 25371236  T

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Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 171
Target Start/End: Original strand, 24285797 - 24285880
Alignment:
Q  88 acaatacaatagcattttaaacaactcaatcaaacaaaatactcctatc-aatatcttaatcaacctaagctcacttcctacaca 171  Q
    ||||||||||||||| ||||||||||||| ||| |||| ||   ||||| ||||| ||||||||| ||| |||||||||||||||    
T  24285797 acaatacaatagcatgttaaacaactcaaacaagcaaattatgactatcaaatat-ttaatcaacttaatctcacttcctacaca 24285880  T

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Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 10770982 - 10770940
Alignment:
Q  168 cacaatcaactttatccatcaaccttgccctccaaacctcttc 210  Q
    |||| |||||||| ||||||||||||||| |||||||||||||    
T  10770982 cacagtcaactttgtccatcaaccttgccttccaaacctcttc 10770940  T

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Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 31 - 235
Target Start/End: Complemental strand, 38473281 - 38473076
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    ||||||| ||||||||||||||||||||||||||  ||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||    
T  38473281 aaggtttgattcattcattgacaacctcttttcattacaacattacatggacttggcaaaatacaatagcattttaaacaactcaatcaaacaaaatact 38473182  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatccttt-gct 229  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  38473181 cctatcaatatcttaatcaacctaagttcacttcctacacaatcaactttatccatcaactttgccctccaaacctcttctctccccctatcctttggct 38473082  T
Q  230 tctcca 235  Q
    ||||||    
T  38473081 tctcca 38473076  T

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Target: chr7; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 30 - 235
Target Start/End: Complemental strand, 24227579 - 24227373
Alignment:
Q  30 caaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatac 129  Q
    |||||||| ||||||||||||||||||||||||||   |||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||    
T  24227579 caaggtttgattcattcattgacaacctcttttcattgcaacattacatggacttggcacaatacaatagcattttaaacaactcaatgaaacaaaatac 24227480  T
Q  130 tcctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatcctttg-c 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||| |    
T  24227479 tcctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacttcttctctccccttatcgtttgac 24227380  T
Q  229 ttctcca 235  Q
    |||||||    
T  24227379 ttctcca 24227373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 31 - 235
Target Start/End: Original strand, 22154867 - 22155072
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    ||||||| ||||||||||||||||||||||||||  ||||||||||||||  |||||||||||||||| |||||||||||| ||||||||||||||||||    
T  22154867 aaggtttgattcattcattgacaacctcttttcattacaacattacatggacttggcacaatacaataacattttaaacaattcaatcaaacaaaatact 22154966  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatccttt-gct 229  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||    
T  22154967 cctatcaatatcttaatcaacctaagctcacttcctacacgatcaactttatccatcaaccttgtcctccaaacctcttctctgcccctatcctttggct 22155066  T
Q  230 tctcca 235  Q
    ||||||    
T  22155067 tctcca 22155072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 31 - 235
Target Start/End: Original strand, 22210782 - 22210987
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    ||||||| ||||||||||||||||||||||||||  ||||||||||||||  |||||||||||||||| |||||||||||| ||||||||||||||||||    
T  22210782 aaggtttgattcattcattgacaacctcttttcattacaacattacatggacttggcacaatacaataacattttaaacaattcaatcaaacaaaatact 22210881  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatccttt-gct 229  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||    
T  22210882 cctatcaatatcttaatcaacctaagctcacttcctacacgatcaactttatccatcaaccttgtcctccaaacctcttctctgcccctatcctttggct 22210981  T
Q  230 tctcca 235  Q
    ||||||    
T  22210982 tctcca 22210987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 31 - 235
Target Start/End: Original strand, 6604492 - 6604697
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    ||||||| ||||||||||||||||||||||||||  |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6604492 aaggtttgattcattcattgacaacctcttttcattacaacattacatgaacttggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 6604591  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatccttt-gct 229  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| | |||||||||||| |||    
T  6604592 cctatcaatatctcaatcaacctaagctcacttcctatacaatcaactttatccatcaaccttgcccttcaaacctcttctttgcccctatcctttggct 6604691  T
Q  230 tctcca 235  Q
    ||||||    
T  6604692 tctcca 6604697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 33 - 208
Target Start/End: Complemental strand, 23905407 - 23905232
Alignment:
Q  33 ggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcc 132  Q
    ||||| ||||||||||||||||||||||||||  ||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  23905407 ggtttgattcattcattgacaacctcttttcattacaacattacatggacttggcacaatacaatagcattttaaacaactgaatcaaacaaaatactcc 23905308  T
Q  133 tatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctct 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  23905307 tatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgtcctccaaacctct 23905232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 32 - 227
Target Start/End: Complemental strand, 46438666 - 46438470
Alignment:
Q  32 aggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactc 131  Q
    |||||| |||||||| |||||||||||||||||  ||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  46438666 aggtttgattcattcgttgacaacctcttttcagtacaacattacatggacttggcacaatacaatagcattttaaacaactcaaccaaacaaaatactc 46438567  T
Q  132 ctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctc-cccctatcctttg 227  Q
     ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||    
T  46438566 atatcaatatcttaatcaacctaagctcacttcctacacagtcaactttatccatcaaccttgtcctccaaacttcttctctcccccctatcctttg 46438470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 34 - 235
Target Start/End: Complemental strand, 34776115 - 34775914
Alignment:
Q  34 gttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcct 133  Q
    |||| ||||||||||||||||||||||||||  ||||||||||||||  |||| ||||| |||||||||||||||||||||||||||||||||||| |||    
T  34776115 gtttgattcattcattgacaacctcttttcattacaacattacatggacttgggacaat-caatagcattttaaacaactcaatcaaacaaaatacacct 34776017  T
Q  134 atcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatccttt-gcttct 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||| ||| ||||||    
T  34776016 atcaatatcttaatcaacctaagctcacttcctacacaatcaactttattcatcaaccttgccctccaaacctcttctttgcccctatcatttggcttct 34775917  T
Q  233 cca 235  Q
    |||    
T  34775916 cca 34775914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 33 - 235
Target Start/End: Original strand, 45360306 - 45360508
Alignment:
Q  33 ggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcc 132  Q
    ||||| ||||||||||||||||||||||||||  ||||||||||||||  |||||||||| || |||||||||||||||||||||| |||||||||||||    
T  45360306 ggtttgattcattcattgacaacctcttttcattacaacattacatggacttggcacaat-cattagcattttaaacaactcaatccaacaaaatactcc 45360404  T
Q  133 tatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatcctttg-cttc 231  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||| ||||    
T  45360405 tatcaatatcttaatcaacctaaactcacttcctatacaatcaactttttccatcaaccttgccctccaaacctcttctccgcccctatcctttgacttc 45360504  T
Q  232 tcca 235  Q
    ||||    
T  45360505 tcca 45360508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 31 - 213
Target Start/End: Complemental strand, 35692507 - 35692326
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    ||||||| ||||||||||||||||||||||||||  ||||||||||||||  |||||||||||||||||||||| ||||||| |||||||||||||||||    
T  35692507 aaggtttgattcattcattgacaacctcttttcattacaacattacatggacttggcacaatacaatagcattt-aaacaacacaatcaaacaaaatact 35692409  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctct 213  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35692408 tttatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccaccaaccttgccctccaaacctcttctct 35692326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 31 - 203
Target Start/End: Complemental strand, 27665203 - 27665031
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    |||||||  |||||||||||||||||||||||||  ||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||    
T  27665203 aaggtttggttcattcattgacaacctcttttcattacaacattacatggacttggcacaatacaatatcattttaaacaactcaatcaaacaaaatact 27665104  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaa 203  Q
    ||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||| ||||||||    
T  27665103 cctatcaatatcttaatcaacctaagctcacttcctacacagttaattttatccatcaaccttgtcctccaaa 27665031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 40 - 203
Target Start/End: Complemental strand, 29995664 - 29995501
Alignment:
Q  40 ttcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaat 139  Q
    |||||||||||| ||||||| ||||  |||||||||||| |  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29995664 ttcattcattgaaaacctctgttcattacaacattacatagacttggcacaatacaatatcattttaaacaactcaatcaaacaaaatactcctatcaat 29995565  T
Q  140 atcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaa 203  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  29995564 atcttaatcaacctaagctcacttcctacacagtcaactttatccatcaaccttgtcctccaaa 29995501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 72 - 235
Target Start/End: Original strand, 69132 - 69296
Alignment:
Q  72 attacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaatatcttaatcaacctaagctcacttcctacaca 171  Q
    |||||||||  |||||||| |||||||| |||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  69132 attacatggacttggcacagtacaatagtatttaaaacaactcaatcaaacaaaatactcatattaatatcttaatcaacctaagctcacttcctacaca 69231  T
Q  172 atcaactttatccatcaaccttgccctccaaacctcttctctccccctatccttt-gcttctcca 235  Q
    || ||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||    
T  69232 atgaactttatccatcaaccttgccctccaaacctcttctctgcccctatcatttggcttctcca 69296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 83 - 235
Target Start/End: Complemental strand, 47385312 - 47385159
Alignment:
Q  83 ttggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttat 182  Q
    ||||||||||| ||||  ||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47385312 ttggcacaataaaataaaattctaaacaactcaatcaaacaaatcactcctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttat 47385213  T
Q  183 ccatcaaccttgccctccaaacctcttctctccccctatccttt-gcttctcca 235  Q
    |||||||||||||| |||||||||||||||| || ||||||||| |||||||||    
T  47385212 ccatcaaccttgccttccaaacctcttctctgccactatcctttggcttctcca 47385159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 33 - 160
Target Start/End: Complemental strand, 39858397 - 39858271
Alignment:
Q  33 ggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcc 132  Q
    ||||| ||||||||||||||||||||||||||  ||||||||||||||  |||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  39858397 ggtttgattcattcattgacaacctcttttcattacaacattacatggacttggcacaat-caataacattttaaacaactcaatcaaacaaaatactcc 39858299  T
Q  133 tatcaatatcttaatcaacctaagctca 160  Q
    ||||||||||||||||||||||||||||    
T  39858298 tatcaatatcttaatcaacctaagctca 39858271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 90 - 212
Target Start/End: Original strand, 48310974 - 48311096
Alignment:
Q  90 aatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaa 189  Q
    |||| ||||||||||||||||| ||||||||||||| ||||| | |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  48310974 aatataatagcattttaaacaattcaatcaaacaaattactcatgtcaatatcttaatcaacctaagttcacttcctacacaatcgactttatccatcaa 48311073  T
Q  190 ccttgccctccaaacctcttctc 212  Q
    | |||||||||||||||||||||    
T  48311074 cattgccctccaaacctcttctc 48311096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 39 - 125
Target Start/End: Complemental strand, 37114677 - 37114591
Alignment:
Q  39 attcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaa 125  Q
    ||||||||||||||||||||||||||| ||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||    
T  37114677 attcattcattgacaacctcttttcaatacaacattacatggacttgacacaatacaatagcattttaaacaactcaatcaaacaaa 37114591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 88 - 210
Target Start/End: Original strand, 11683621 - 11683743
Alignment:
Q  88 acaatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatc 187  Q
    ||||||||||||||| ||||| ||||||| |||  ||| ||   ||||||| | |||||||||||||||||||||||||| ||| |||||||| ||||||    
T  11683621 acaatacaatagcatgttaaaaaactcaaacaagtaaattatgactatcaaaaacttaatcaacctaagctcacttcctatacactcaactttgtccatc 11683720  T
Q  188 aaccttgccctccaaacctcttc 210  Q
    |||||||||||||||||||||||    
T  11683721 aaccttgccctccaaacctcttc 11683743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 88 - 211
Target Start/End: Original strand, 32840488 - 32840610
Alignment:
Q  88 acaatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatc 187  Q
    ||||||||||| ||| ||||| || |||| ||| |||| ||  ||||||||   |||||||| | |||| ||||||||||||||||||||||| ||||||    
T  32840488 acaatacaataacatgttaaaaaattcaaacaagcaaattatgcctatcaaatacttaatcatc-taagttcacttcctacacaatcaactttgtccatc 32840586  T
Q  188 aaccttgccctccaaacctcttct 211  Q
    ||||||||||||||||||| ||||    
T  32840587 aaccttgccctccaaacctattct 32840610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 4321865 - 4321800
Alignment:
Q  142 cttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctc 207  Q
    |||||||| |||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||    
T  4321865 cttaatcaccctaagcttacttcctatacaatcaactttgtccatcaaccttgccctccaaacctc 4321800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 88 - 195
Target Start/End: Original strand, 7402914 - 7403021
Alignment:
Q  88 acaatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatc 187  Q
    |||||||| |||||| ||||||||| ||| |||||||| ||   |||||||   |||||||||||||| || || |||||||||||||||||| ||||||    
T  7402914 acaatacagtagcatgttaaacaacccaaacaaacaaattatgactatcaaatacttaatcaacctaatcttacatcctacacaatcaactttgtccatc 7403013  T
Q  188 aaccttgc 195  Q
    ||||||||    
T  7403014 aaccttgc 7403021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 90 - 193
Target Start/End: Original strand, 23168648 - 23168751
Alignment:
Q  90 aatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaa 189  Q
    ||||||||| ||| ||||||||  ||||||||| || |||| |||||||   ||||||||| |||| |||||||| ||||||||||||||||||| ||||    
T  23168648 aatacaataacatgttaaacaatccaatcaaacgaattacttctatcaaatacttaatcaatctaaactcacttcgtacacaatcaactttatccgtcaa 23168747  T
Q  190 cctt 193  Q
    ||||    
T  23168748 cctt 23168751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 13169050 - 13169122
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattt 104  Q
    ||||||| ||||||||||||||||||||||||||  ||||||||||||||  |||||||||| |||||||||||    
T  13169050 aaggtttgattcattcattgacaacctcttttcattacaacattacatggacttggcacaat-caatagcattt 13169122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 34691873 - 34691938
Alignment:
Q  142 cttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctc 207  Q
    ||||||||||||||| ||||||| || |||||||||||| ||||||||| ||||||||||||||||    
T  34691873 cttaatcaacctaagttcacttcatatacaatcaactttgtccatcaacgttgccctccaaacctc 34691938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 34784647 - 34784575
Alignment:
Q  132 ctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaac 204  Q
    ||||||| | ||||||||||||||||||||||| || |||||||||||| ||||||||| ||||||| |||||    
T  34784647 ctatcaaaaacttaatcaacctaagctcacttcttatacaatcaactttgtccatcaacattgcccttcaaac 34784575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 210
Target Start/End: Original strand, 40360951 - 40361028
Alignment:
Q  133 tatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttc 210  Q
    |||||||  ||| ||||| |||||||||||| ||| |||||||||||| |||||||||||||| |||||||| |||||    
T  40360951 tatcaattactttatcaatctaagctcactttctaaacaatcaactttgtccatcaaccttgctctccaaacttcttc 40361028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 13035937 - 13035993
Alignment:
Q  142 cttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccct 198  Q
    |||||||||||||| ||||||||||||| | |||||||| |||||||||||| ||||    
T  13035937 cttaatcaacctaatctcacttcctacatagtcaactttctccatcaaccttcccct 13035993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 48302936 - 48302873
Alignment:
Q  143 ttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctc 207  Q
    ||||||| ||||||||||||||||  |||||||||||| ||||||||| ||| ||||||||||||    
T  48302936 ttaatcaccctaagctcacttcctgtacaatcaactttgtccatcaacgttg-cctccaaacctc 48302873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 160
Target Start/End: Original strand, 13169123 - 13169162
Alignment:
Q  121 acaaaatactcctatcaatatcttaatcaacctaagctca 160  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  13169123 acaaaatattcctatcaatatcttaatcaacctaagctca 13169162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 38550356 - 38550316
Alignment:
Q  86 gcacaatacaatagcattttaaacaactcaatcaaacaaaa 126  Q
    ||||||||||||| |||||||||||||||||| | ||||||    
T  38550356 gcacaatacaataacattttaaacaactcaataacacaaaa 38550316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 31 - 235
Target Start/End: Complemental strand, 6817873 - 6817668
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    ||||||| ||||||||||||||||||||||||||  ||||||||| |||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6817873 aaggtttgattcattcattgacaacctcttttcattacaacattatatgtacttggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 6817774  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatccttt-gct 229  Q
    | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||    
T  6817773 catatcaatatcttaatcaacctaagctcacttcttacacaatcaactttatccatcaaccttgccctccaaacctcttctctgcccctatcctttggct 6817674  T
Q  230 tctcca 235  Q
    ||||||    
T  6817673 tctcca 6817668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 31 - 220
Target Start/End: Original strand, 27088253 - 27088442
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    ||||||| ||||||||||||||||||||||||||  ||||||||||||||  ||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  27088253 aaggtttgattcattcattgacaacctcttttcattacaacattacatggacttgacacaatacaatagcattttaaacaactcagtcaaacaaaatact 27088352  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctcccccta 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  27088353 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgtcctccaaacctcttctctgccccta 27088442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 40 - 235
Target Start/End: Complemental strand, 45045651 - 45045455
Alignment:
Q  40 ttcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaat 139  Q
    |||||||||||||||| ||||||||  ||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45045651 ttcattcattgacaacttcttttcattacaacattacatggacttgacacaatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaat 45045552  T
Q  140 atcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatccttt-gcttctcca 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||| |||||||||    
T  45045551 atcttaatcaacctaagctcacttcctacacaatcaactttatccatcaagcttgccctccaaacctcttctttgcccctatcctttggcttctcca 45045455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 39 - 235
Target Start/End: Complemental strand, 50555251 - 50555055
Alignment:
Q  39 attcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaa 138  Q
    ||||||||||||||||||||||||||  ||||||||||||||  |||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||    
T  50555251 attcattcattgacaacctcttttcattacaacattacatggacttggcacaat-caataacattttaaacaactccatcaaacaaaatactcctatcaa 50555153  T
Q  139 tatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatccttt-gcttctcca 235  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  50555152 tatcttaatcaacctaaactcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctgcccctatcctttggcttctcca 50555055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 40 - 235
Target Start/End: Original strand, 37345312 - 37345508
Alignment:
Q  40 ttcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaat 139  Q
    |||| ||||||||||||||||||||  ||||||||||||||  ||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  37345312 ttcagtcattgacaacctcttttcattacaacattacatggacttgacacaatacaataacattttaaacaactcaatcaaacaaaatactcatatcaat 37345411  T
Q  140 atcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatccttt-gcttctcca 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||| |||||||||    
T  37345412 atcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctttgcccatatcctttggcttctcca 37345508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 67 - 235
Target Start/End: Complemental strand, 25277488 - 25277319
Alignment:
Q  67 acaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaatatcttaatcaacctaagctcacttcct 166  Q
    ||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25277488 acaacattacatggacttgacacaatacaatagcattttaaacaactcaatcaaacaaaatactcatatcaatatcttaatcaacctaagctcacttcct 25277389  T
Q  167 acacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatccttt-gcttctcca 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||    
T  25277388 acacaatcaactttatccatcaaccttgccctccaaacctcttctttgcccctatcctttggcttctcca 25277319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 31 - 235
Target Start/End: Complemental strand, 26224710 - 26224497
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattaca--------tgggattggcacaatacaatagcattttaaacaactcaatcaaac 122  Q
    ||||||| ||||||||||||||||||||||||||  |||||||||||        |||  |||||||||||||||| |||||||||||||||| ||||||    
T  26224710 aaggtttgattcattcattgacaacctcttttcagtacaacattacaacattacatggacttggcacaatacaataacattttaaacaactcagtcaaac 26224611  T
Q  123 aaaatactcctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatc 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  26224610 aaaatactcctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgcccttcaaacctcttctcttcccctatc 26224511  T
Q  223 ctttg-cttctcca 235  Q
     |||| ||||||||    
T  26224510 ttttgtcttctcca 26224497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 67 - 228
Target Start/End: Complemental strand, 33600265 - 33600104
Alignment:
Q  67 acaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaatatcttaatcaacctaagctcacttcct 166  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  33600265 acaacattacatggacttggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaatatcttaatcaacctaagctgccttcct 33600166  T
Q  167 acacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatcctttgc 228  Q
    | |||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||    
T  33600165 agacaatcaactttatccatcaaccttgccctccaaacctcttccctgcccctatcatttgc 33600104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 31 - 203
Target Start/End: Complemental strand, 46582745 - 46582573
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    |||||||  |||||||||||||||||||||||||  |||||| |||||||  |||||||||||||||| |||||||||||||||||||||||||||||||    
T  46582745 aaggtttggttcattcattgacaacctcttttcattacaacaatacatggacttggcacaatacaatatcattttaaacaactcaatcaaacaaaatact 46582646  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaa 203  Q
    | ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||    
T  46582645 catatcaatatcttaatcaacctaagctcacttcctacaaaatcaagtttatccatcaaccttgtcctccaaa 46582573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 39 - 213
Target Start/End: Original strand, 15105421 - 15105595
Alignment:
Q  39 attcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaa 138  Q
    ||||||||||||||||||||||||||  |||||||||||  |  ||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  15105421 attcattcattgacaacctcttttcattacaacattacacagacttgacacaatacaataacattttaaacaactcaatcaaacaaattactcctatcaa 15105520  T
Q  139 tatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctct 213  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||||||||||| | ||||||||||||||||    
T  15105521 tatcttaatcaacctaagctcatttcctacacaatcaacttcatccatcaaccttgtcatccaaacctcttctct 15105595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 151 - 235
Target Start/End: Original strand, 37087316 - 37087401
Alignment:
Q  151 cctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatccttt-gcttctcca 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  37087316 cctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatcatttggcttctcca 37087401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 146
Target Start/End: Complemental strand, 31237661 - 31237556
Alignment:
Q  33 ggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcc 132  Q
    ||||| ||||||||||||||||||||||||||        ||||||||  |||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  31237661 ggtttgattcattcattgacaacctcttttca--------ttacatggacttggtacaatacaatatcattttaaacaactcaatcaaacaaaatactcc 31237570  T
Q  133 tatcaatatcttaa 146  Q
    ||||||||||||||    
T  31237569 tatcaatatcttaa 31237556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 31 - 125
Target Start/End: Complemental strand, 3012610 - 3012516
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaa 125  Q
    ||||||| ||||||||||||||||||| ||||||  ||||||||||||||  |||||||||||||||| ||||||||| ||||||||||||||||    
T  3012610 aaggtttgattcattcattgacaacctattttcatcacaacattacatggacttggcacaatacaataacattttaaataactcaatcaaacaaa 3012516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 31 - 125
Target Start/End: Complemental strand, 51895322 - 51895228
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaa 125  Q
    ||||||| ||||||||||||||||||||||||||  ||||||||||||||   || || ||||||||| ||||||||||||||||||||||||||    
T  51895322 aaggtttgattcattcattgacaacctcttttcattacaacattacatggacatgacataatacaataacattttaaacaactcaatcaaacaaa 51895228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 42558916 - 42558848
Alignment:
Q  142 cttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttc 210  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||    
T  42558916 cttaatcaacctaagctcacttcctacacagtcaactttgtccatcaaccatgccctccaaacctcttc 42558848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 126
Target Start/End: Complemental strand, 52642785 - 52642698
Alignment:
Q  39 attcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaa 126  Q
    |||||||||||| |||||||||||||  |||||||||||  |  |||||||||| ||||| |||||||||||||||||||| ||||||    
T  52642785 attcattcattggcaacctcttttcattacaacattacacagacttggcacaatgcaataacattttaaacaactcaatcacacaaaa 52642698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 3370035 - 3369967
Alignment:
Q  142 cttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttc 210  Q
    ||||||||||| ||||||||| |||||  | |||||||| ||||||||||||| |||||||||||||||    
T  3370035 cttaatcaaccaaagctcactccctacgtagtcaactttgtccatcaaccttgtcctccaaacctcttc 3369967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 51122987 - 51123059
Alignment:
Q  132 ctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaac 204  Q
    ||||||| | ||||||||||||||||||| |||||| |  ||||||||| |||||| ||||  ||||||||||    
T  51122987 ctatcaaaaacttaatcaacctaagctcagttcctaaagtatcaactttgtccatctacctcaccctccaaac 51123059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 2870566 - 2870615
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgg 80  Q
    |||||||  ||||||||||||||||||||||||   ||||||||||||||    
T  2870566 aaggtttggttcattcattgacaacctcttttcgttacaacattacatgg 2870615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Original strand, 5784211 - 5784239
Alignment:
Q  182 tccatcaaccttgccctccaaacctcttc 210  Q
    |||||||||||||||||||||||||||||    
T  5784211 tccatcaaccttgccctccaaacctcttc 5784239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 32086009 - 32086073
Alignment:
Q  146 atcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttc 210  Q
    ||||| |||| ||||||| ||| |||||||||||| ||||||||| || || |||||| ||||||    
T  32086009 atcaatctaaactcacttactaaacaatcaactttgtccatcaacatttccttccaaaactcttc 32086073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 31 - 227
Target Start/End: Complemental strand, 42472640 - 42472444
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    ||||||| ||||||||||||||||||| ||||||  ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42472640 aaggtttgattcattcattgacaaccttttttcattacaacattacatggacttggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 42472541  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatcctttg 227  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  42472540 cctatcaataacttaatcaacctaagctcacttcctagacaatcaactttatccatcaaccttgccctccaaacctcttctctgcccctatcatttg 42472444  T

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Target: chr5; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 34 - 227
Target Start/End: Original strand, 28821364 - 28821557
Alignment:
Q  34 gttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcct 133  Q
    |||| ||||||||||||||||||||||||||  ||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28821364 gtttgattcattcattgacaacctcttttcattacaacattagatggacttggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcct 28821463  T
Q  134 atcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatcctttg 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||| ||||||||||    
T  28821464 atcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaacctttccctccaaacctcttatatccctctatcctttg 28821557  T

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Target: chr5; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 31 - 220
Target Start/End: Original strand, 21841968 - 21842157
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    ||||||| ||||||||||||||||||||||||||  ||||||||||||||  ||| |||||||||||| |||||||||||||||| ||||||||||||||    
T  21841968 aaggtttgattcattcattgacaacctcttttcattacaacattacatggacttgccacaatacaataacattttaaacaactcagtcaaacaaaatact 21842067  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctcccccta 220  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  21842068 cctatcaatatcttagtcaacctaagctcacttcctacacaatcaactttatccatcaaccttgtcctccaaacctcttctctgccccta 21842157  T

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Target: chr5; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 33 - 235
Target Start/End: Original strand, 2180743 - 2180943
Alignment:
Q  33 ggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcc 132  Q
    ||||| ||||||||||||||||||||||||||  ||||||||||||||  |||||||||| ||||| |||||||||  ||||||||||||||||||||||    
T  2180743 ggtttgattcattcattgacaacctcttttcattacaacattacatggacttggcacaat-caataacattttaaa--actcaatcaaacaaaatactcc 2180839  T
Q  133 tatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatcctttg-cttc 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| | ||||| ||||||| ||||    
T  2180840 tatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatcgatcaaccttgtcctccaaacctcttctttgcccctgtcctttgacttc 2180939  T
Q  232 tcca 235  Q
    ||||    
T  2180940 tcca 2180943  T

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Target: chr5; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 31 - 203
Target Start/End: Complemental strand, 2853425 - 2853253
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatact 130  Q
    |||||||  ||||||||||||||| || ||||||  ||||||||||||||  |||||||| ||||||| ||||||||||||||||||||||||||||| |    
T  2853425 aaggtttggttcattcattgacaatctattttcattacaacattacatggacttggcacattacaatatcattttaaacaactcaatcaaacaaaatatt 2853326  T
Q  131 cctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaa 203  Q
    | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  2853325 catatcaatatcttaatcaacctaagctcacttcttacacaatcaactttatccatcaaccttgtcctccaaa 2853253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 109 - 235
Target Start/End: Original strand, 17575700 - 17575828
Alignment:
Q  109 caactcaatcaaacaaaatactcctatcaatatcttaatcaacctaagctcactt-cctacacaatcaactttatccatcaaccttgccctccaaacctc 207  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17575700 caactcagtcaaacaaaatactcctatcaatatcttaatcaacctaagctcactttcctacacaatcaactttatccatcaaccttgccctccaaacctc 17575799  T
Q  208 ttctctccccctatccttt-gcttctcca 235  Q
    |||||| |||||||| ||| |||||||||    
T  17575800 ttctctgcccctatcatttggcttctcca 17575828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 109 - 235
Target Start/End: Original strand, 17577011 - 17577139
Alignment:
Q  109 caactcaatcaaacaaaatactcctatcaatatcttaatcaacctaagctcactt-cctacacaatcaactttatccatcaaccttgccctccaaacctc 207  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17577011 caactcagtcaaacaaaatactcctatcaatatcttaatcaacctaagctcactttcctacacaatcaactttatccatcaaccttgccctccaaacctc 17577110  T
Q  208 ttctctccccctatccttt-gcttctcca 235  Q
    |||||| |||||||| ||| |||||||||    
T  17577111 ttctctgcccctatcatttggcttctcca 17577139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 33 - 160
Target Start/End: Original strand, 12800897 - 12801023
Alignment:
Q  33 ggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcc 132  Q
    ||||| ||||||||||||||||||||||||||  ||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12800897 ggtttgattcattcattgacaacctcttttcattacaacattacatggacttggcacaat-caatagcattttaaacaactcaatcaaacaaaatactcc 12800995  T
Q  133 tatcaatatcttaatcaacctaagctca 160  Q
    ||||||||||||||||||||||||||||    
T  12800996 tatcaatatcttaatcaacctaagctca 12801023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 105 - 227
Target Start/End: Complemental strand, 18624398 - 18624276
Alignment:
Q  105 taaacaactcaatcaaacaaaatactcctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaac 204  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||    
T  18624398 taaacaactcaatcaaacaaattactcctatcaatatcttaatcaacctaagctcacttcctacacaatcaacttcatccatcaaccttgtcatccaaac 18624299  T
Q  205 ctcttctctccccctatcctttg 227  Q
    |||||||||  | ||||||||||    
T  18624298 ctcttctctgacactatcctttg 18624276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 33 - 160
Target Start/End: Original strand, 12738074 - 12738200
Alignment:
Q  33 ggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcc 132  Q
    ||||| |||||||||| ||||||||||||| |  ||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12738074 ggtttgattcattcatcgacaacctctttttattacaacattacatggacttggcacaat-caatagcattttaaacaactcaatcaaacaaaatactcc 12738172  T
Q  133 tatcaatatcttaatcaacctaagctca 160  Q
    ||||||||||||||||||||||||||||    
T  12738173 tatcaatatcttaatcaacctaagctca 12738200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 109 - 235
Target Start/End: Original strand, 17574980 - 17575108
Alignment:
Q  109 caactcaatcaaacaaaatactcctatcaatat-cttaatcaacctaagctcactt-cctacacaatcaactttatccatcaaccttgccctccaaacct 206  Q
    ||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17574980 caactcagtcaaacaaa-tactcctatcaatatacttaatcaacctaagctcactttcctacacaatcaactttatccatcaaccttgccctccaaacct 17575078  T
Q  207 cttctctccccctatccttt-gcttctcca 235  Q
    ||||||| |||||||| ||| |||||||||    
T  17575079 cttctctgcccctatcatttggcttctcca 17575108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 33 - 146
Target Start/End: Complemental strand, 30464792 - 30464679
Alignment:
Q  33 ggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcc 132  Q
    ||||| ||||||||||||||||||||||||||  ||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  30464792 ggtttgattcattcattgacaacctcttttcattacaacattacatggacttggcacaatacaatatcattttaaacaactcaatcaaacaaaatactcc 30464693  T
Q  133 tatcaatatcttaa 146  Q
    ||| ||||||||||    
T  30464692 tatgaatatcttaa 30464679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 31 - 125
Target Start/End: Original strand, 8540638 - 8540732
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaa 125  Q
    ||||||| ||||||||||||||||||| ||||||  ||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||    
T  8540638 aaggtttgattcattcattgacaacctattttcattacaacattacatggatttgacacaatacaatagcattttaaacaactcaatcaaacaaa 8540732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 31 - 125
Target Start/End: Complemental strand, 32134991 - 32134897
Alignment:
Q  31 aaggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaa 125  Q
    ||||||| ||||||||||||||||||||||||||  |||||||||||| |  ||| |||||||||||| ||||||||||||||||||||||||||    
T  32134991 aaggtttgattcattcattgacaacctcttttcattacaacattacatcgacttgacacaatacaataacattttaaacaactcaatcaaacaaa 32134897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 88 - 207
Target Start/End: Original strand, 1344229 - 1344348
Alignment:
Q  88 acaatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatc 187  Q
    ||||||||  ||||| ||||| ||||||| ||| |||| ||   |||| || | |||||||| ||||||||||||||||| |||||||||||| ||||||    
T  1344229 acaatacagcagcatgttaaaaaactcaaacaagcaaattatgactatgaaaaacttaatcagcctaagctcacttcctatacaatcaactttgtccatc 1344328  T
Q  188 aaccttgccctccaaacctc 207  Q
    ||||||||||||||||||||    
T  1344329 aaccttgccctccaaacctc 1344348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 28036443 - 28036377
Alignment:
Q  144 taatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttc 210  Q
    ||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||    
T  28036443 taatcaatctaagctcacttcctacacaatcaattttgtccatcaaccttgccctccaaacttcttc 28036377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 90 - 207
Target Start/End: Complemental strand, 1343861 - 1343744
Alignment:
Q  90 aatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaa 189  Q
    |||||| |||||| ||||| ||||||| ||| |||| ||   ||||||| | |||||||| | ||||||||||| ||| |||||||||||| ||||||||    
T  1343861 aatacagtagcatgttaaaaaactcaaacaagcaaattatgactatcaaaaacttaatcagcataagctcactttctatacaatcaactttgtccatcaa 1343762  T
Q  190 ccttgccctccaaacctc 207  Q
    ||||| ||| ||||||||    
T  1343761 ccttgtccttcaaacctc 1343744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 18341214 - 18341275
Alignment:
Q  142 cttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaa 203  Q
    |||||||||  |||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  18341214 cttaatcaatttaagctcacttcctacacaatcaactttgtccatcaacattgccctccaaa 18341275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 27349967 - 27350039
Alignment:
Q  132 ctatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaac 204  Q
    ||||||| | ||||||||||||||||||| |||||| |  ||||||||| |||||||||||  ||||||||||    
T  27349967 ctatcaaaaacttaatcaacctaagctcaattcctaaagtatcaactttgtccatcaacctcaccctccaaac 27350039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 41494591 - 41494524
Alignment:
Q  39 attcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcatttta 106  Q
    ||||||||||||||||||||||||||  || ||||||||  |  |||||||||||||||| |||||||    
T  41494591 attcattcattgacaacctcttttcattactacattacacagacttggcacaatacaataacatttta 41494524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 33 - 235
Target Start/End: Original strand, 9238 - 9441
Alignment:
Q  33 ggttttattcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcc 132  Q
    ||||| ||||||||||||||||||||||||||  ||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9238 ggtttgattcattcattgacaacctcttttcattacaacattacatggacttgacacaatacaatagcattttaaacaactcaatcaaacaaaatactcc 9337  T
Q  133 tatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatccttt-gcttc 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||| ||| |||||    
T  9338 tatcaatatcttaatcaacctaagctcacttcctacacaatcaactttatcgatcaaccttgccctccaaacctcttctctgctcctatcatttggcttc 9437  T
Q  232 tcca 235  Q
    ||||    
T  9438 tcca 9441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 39 - 227
Target Start/End: Complemental strand, 107735 - 107547
Alignment:
Q  39 attcattcattgacaacctcttttcaagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaa 138  Q
    ||||||||||||||||||| ||||||  || ||||||||     |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  107735 attcattcattgacaaccttttttcattactacattacacaaacttggcacaatacaataacattttaaacaactcaatcaaacaaattactcctatcaa 107636  T
Q  139 tatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttctctccccctatcctttg 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||  | ||||||||||    
T  107635 tatcttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctcaaaacctcttcgctgacactatcctttg 107547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0920 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0920
Description:

Target: scaffold0920; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 43 - 211
Target Start/End: Complemental strand, 1664 - 1497
Alignment:
Q  43 attcattgacaacctctttt-caagacaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaatat 141  Q
    ||||||||||||| |||||| ||  |||||||||||| |  |||||| ||||||||| |||||||||||||||||||||||||| |||||||||||| ||    
T  1664 attcattgacaacatctttttcattacaacattacatagacttggcataatacaataacattttaaacaactcaatcaaacaaattactcctatcaacat 1565  T
Q  142 cttaatcaacctaagctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttct 211  Q
    |||||||| |||||  |||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  1564 cttaatcagcctaaattcacttcctacacaatcaactttatccat--accttgccctccaaacctcttct 1497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 67 - 177
Target Start/End: Original strand, 572 - 682
Alignment:
Q  67 acaacattacatgggattggcacaatacaatagcattttaaacaactcaatcaaacaaaatactcctatcaatatcttaatcaacctaagctcacttcct 166  Q
    |||||||||||||   ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||    
T  572 acaacattacatgaacttggcacaatagaatagcattttaaacaactcaatcaaacaaaatacttctatcaatatcgtaatcaacctaagctgacttcct 671  T
Q  167 acacaatcaac 177  Q
    |||||||||||    
T  672 acacaatcaac 682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 677 - 728
Alignment:
Q  185 atcaaccttgccctccaaacctcttctctccccctatccttt-gcttctcca 235  Q
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T  677 atcaaccttgccctccaaacctcttctctacccctatcatttggcttctcca 728  T

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