View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21393_low_2 (Length: 586)
Name: NF21393_low_2
Description: NF21393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21393_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 17 - 420
Target Start/End: Original strand, 44853172 - 44853564
Alignment:
| Q |
17 |
gatgaaagaagtgagagtgaccaactgatgaaacgtgaaattcgggacgaaatgcaaaatggtgagaaaatgagactgtggttttatagcaggtggggtt |
116 |
Q |
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| T |
44853172 |
gatgaaagaagtgagagtgaccaactgatgaaacgtgaaattcgggacgaaatgtaaaatggtgagaaaatgagactgtggttttatagcaggtggggtt |
44853271 |
T |
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| Q |
117 |
ttcatgtgccggacttcaaattttgttcaaatctgatttaatattttgtcctatagtacgatttttgtggtaaaagatgaaaaagaaaatggtattttat |
216 |
Q |
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| T |
44853272 |
ttcatgtgccggacttcaaattttgttcaaatctgatttaatattttgtcctatagtacgatttttatggtaaaagatgaaaaagaaaatggtattttat |
44853371 |
T |
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| Q |
217 |
cattannnnnnncggtaaaagataaaaaggaaaatgatatttatccgcgccgttggtgccgtggtttctagggttagaatcgaatcatgtagtttacaat |
316 |
Q |
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| T |
44853372 |
cattatttttttgggtaaaagataaaaaggaaaa-----------cgcgccgttggtgccgtggtttctagggttagaatcgagtcatgtagtttacaat |
44853460 |
T |
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| Q |
317 |
gggccgggttgcgtatattggatttagcaggcctgtcgattttattttaacgcgtttataacaaatcattttggtccatattcgatctcgtctttggttt |
416 |
Q |
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| T |
44853461 |
gggtcgggttgcgtatattggatttagcaggcctgtcgattttattttaacgcgtttataaaaaattattttggtccatattcgatctcgtctttggatt |
44853560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 446 - 558
Target Start/End: Original strand, 44853564 - 44853676
Alignment:
| Q |
446 |
atgtgagatttgaagatttattagaaaatgaaatggnnnnnnngttatcctcatctttgttgatcaagttttgagtcatttgaaataagctaatttaagt |
545 |
Q |
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| T |
44853564 |
atgtgagatttgaagatctattagaaaatgaaatggtttttttgttatcctcatctttgttgaacaagttttgagtcatttgaaataagctaatttaagt |
44853663 |
T |
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| Q |
546 |
tctatttctatac |
558 |
Q |
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| T |
44853664 |
tctatttctatac |
44853676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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