View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21393_low_20 (Length: 219)
Name: NF21393_low_20
Description: NF21393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21393_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 3004838 - 3005041
Alignment:
| Q |
1 |
tggtcctttggagatgctaattttatagaaaattatgtttttgtttcaggtaaaacttattcagaagacaatggaatagaaagttgtctgtggtta---g |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
3004838 |
tggtcctttggagatgctaattttatagaaaattatgtttttgtttcaggtaaaacttattcaaaagacaatggaatagaaagttgtctgtggttataag |
3004937 |
T |
|
| Q |
98 |
tgagacgaaagctttaaggttgtgactggtgcggttttcagacaacagactgatgtggttcaactgtgttggcagtggtgatgtgttgcggtttgctacc |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3004938 |
tgagacgaaagctttaaggttgtgactggtgcggttttcggacaacagactgatgtggttcaactgtgttggcagtggtgatgtgctgcggtttgctacc |
3005037 |
T |
|
| Q |
198 |
tatg |
201 |
Q |
| |
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|||| |
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|
| T |
3005038 |
tatg |
3005041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 54654840 - 54655040
Alignment:
| Q |
1 |
tggtcctttggagatgctaattttatagaaaattatgtttttgtttcaggtaaaacttattcagaagacaatggaatagaaagttgtctgtggttagtga |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
54654840 |
tggtcctttggagatgctaattttataaaaaattatgtttttgtttcaggtaaaacttattcagaagacaatggaatacaaagctgtctgtggttagtga |
54654939 |
T |
|
| Q |
101 |
gacgaaagctttaaggttgtgactggtgcggttttcagacaacagactgatgtggttcaactgtgttggcagtggtgatgtgttgcggtttgctacctat |
200 |
Q |
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| T |
54654940 |
gacgaaagctttaaggttgtgactagtgcggttttcagacagcagactgttgtggttcaactgtgttggcagtggtgatgtgctgcggtttgctacctat |
54655039 |
T |
|
| Q |
201 |
g |
201 |
Q |
| |
|
| |
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|
| T |
54655040 |
g |
54655040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 20604530 - 20604611
Alignment:
| Q |
1 |
tggtcctttggagatgctaattttatagaaaattatgtttttgtttcaggtaaaacttattcagaagacaatggaatagaaa |
82 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
20604530 |
tggtcctttggagatgcaaattttatagaaaattatgtttttgtttcaggtaaaacttatttagaagacaatggcatagaaa |
20604611 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 29310805 - 29310880
Alignment:
| Q |
7 |
tttggagatgctaattttatagaaaattatgtttttgtttcaggtaaaacttattcagaagacaatggaatagaaa |
82 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
29310805 |
tttggagatgcaaattttatagaaaattatgtttttgtttcaggtaaaacttatttaaaagacaatggaatagaaa |
29310880 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 51649171 - 51649252
Alignment:
| Q |
1 |
tggtcctttggagatgctaattttatagaaaattatgtttttgtttcaggtaaaacttattcagaagacaatggaatagaaa |
82 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
51649171 |
tggtcctttggagatgcaaattttatagaaaattatgtttttgtttcaggtaaaacttatttagaagacaatgacatagaaa |
51649252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 30848012 - 30847932
Alignment:
| Q |
1 |
tggtcctttggagatgctaattttatagaaaattatgtttttgtttcaggtaaaacttattcagaagacaatggaatagaaa |
82 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
30848012 |
tggtcctttggaga-gcaaattttatagaaaattatgtttttgtttcaggtaaaactaatttagaagacaatggaatagaaa |
30847932 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 31449287 - 31449326
Alignment:
| Q |
1 |
tggtcctttggagatgctaattttatagaaaattatgttt |
40 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
31449287 |
tggtcctttggagatgctaattttatagaaaattatgttt |
31449326 |
T |
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