View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21393_low_21 (Length: 209)
Name: NF21393_low_21
Description: NF21393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21393_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 7e-85; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 4819866 - 4820028
Alignment:
| Q |
18 |
caaagggaaagatcatatagagtgagatgttcatttgtgtagtaaagacttaagagaagggtaacttgtcacacatcggaagtttgagaagcttagagat |
117 |
Q |
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| T |
4819866 |
caaagggaaagatcatatagagtgagatgttcatttgtgtagtaaagacttaagagaagggtaacttgtcacacatcggaagtttgagaagcttagagag |
4819965 |
T |
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| Q |
118 |
ataactaccattataaataaagcttagacaaactttctttggtagaggtgatgtttggtggaa |
180 |
Q |
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| T |
4819966 |
ataactaccattataaataaagcttagacaaactttctttggtagaggtgatgtttggtggaa |
4820028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 4798621 - 4798682
Alignment:
| Q |
83 |
ttgtcacacatcggaagtttgagaagcttagagatat-aactaccattataaataaagctta |
143 |
Q |
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| T |
4798621 |
ttgtcccacatcggaagtttgagaaacttagagatgtaaactaccattataaataaagctta |
4798682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 4803546 - 4803596
Alignment:
| Q |
89 |
cacatcggaagtttgagaagcttagagatat-aactaccattataaataaa |
138 |
Q |
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| T |
4803546 |
cacatgggacgtttgagaagcttagagatgtaaactaccattataaataaa |
4803596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 4817779 - 4817837
Alignment:
| Q |
83 |
ttgtcacacatcggaagtttgagaagcttagagatat-aactaccattataaataaagc |
140 |
Q |
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| T |
4817779 |
ttgtcccacatcgaaagtttgagaaacttagagatgtaaactactattataaataaagc |
4817837 |
T |
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