View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21393_low_3 (Length: 529)
Name: NF21393_low_3
Description: NF21393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21393_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 366
Target Start/End: Complemental strand, 34331485 - 34331146
Alignment:
| Q |
19 |
ataagagaagcttttgtttgaattattatttttgtagagaattcatatatgtacacaattgtagcgactaataacgcaaattagatgagataaatcaatg |
118 |
Q |
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| T |
34331485 |
ataagagaagcttttgtttgaattattatttttgcagagaattcatatctgtacacaactgtagcgactaataacgcaaactagataagataaatcagtg |
34331386 |
T |
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| Q |
119 |
ggnnnnnnnnttatccctcaagaattttattgctcttagattccttcaannnnnnnnnnnnnnnnattgctcttagattttaagaagcaaaattt-aatt |
217 |
Q |
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| T |
34331385 |
g--aaaaaaattatccctcaagaatttttttgctcttagattccttcaattttttttt-------attgctcttagattttaaggagcaaaattttaatt |
34331295 |
T |
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| Q |
218 |
tattacgttcttatttctctgaaagattgtatcatatcattcaaatgaagaatgctcgagagatcattcatattgggcaaagagtaatcacgcaatatag |
317 |
Q |
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| T |
34331294 |
tattacgttcttatttctatgaaagatcgtatcatatcattcaaatgaagaatgcttgagagatcattcatattgggcaaagagtaatcacgcaatatag |
34331195 |
T |
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| Q |
318 |
tcgatcactttagtaaacatcgattatggtagcattaccggattatgag |
366 |
Q |
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| T |
34331194 |
tcgatcactttagtaaccatcgactatggtagcattaccggattatgag |
34331146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 362 - 511
Target Start/End: Complemental strand, 34331100 - 34330951
Alignment:
| Q |
362 |
atgagttgaacatcacatcttaactcaaatgtgagacttttatctcacacttcctacacaacaatatcaagacttacaacacaaggagtattttacttta |
461 |
Q |
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| T |
34331100 |
atgagttgaacatcacatcttaactcaaatgtgagacttttatctcacacttcctacacaacaatatcaagacttgcaacacaaggagtattttacttta |
34331001 |
T |
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| Q |
462 |
ttaaccaacaactctggtagcagtgttgggtcatgaggagagtctaaatg |
511 |
Q |
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| T |
34331000 |
ttaactaacaactctggtagcagtgttgggtcatgaggagagtctaaatg |
34330951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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