View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21393_low_5 (Length: 512)
Name: NF21393_low_5
Description: NF21393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21393_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 15 - 383
Target Start/End: Original strand, 6868362 - 6868729
Alignment:
| Q |
15 |
atcataactaacgtcggaacggatttgaacggtggttttggataagggtgatttgtgtttgggggtatttgagattgggaggaagtggttttgatggaga |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6868362 |
atcataactaacgtcggaacggatttgaacggtggttttggataagggtgatttgtgtttgggggtatttgagattgggaggaagtgggtttgatggaga |
6868461 |
T |
|
| Q |
115 |
agtggttttttagagaagctggtttgagtaggttgtgagtgtaaggaagaaacgttgccgttgagaagagaagccatagagataatttgtttggtggagt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
6868462 |
agtggttttttagagaagctggtttgagtaggttgtgagtgtaaggaagaaacgttgccgttgagaagagaagccatagaggaaattggtttggtggagt |
6868561 |
T |
|
| Q |
215 |
atgcaaagtgattatgtggtgtgtttaataatggttgtgtataagttcagcccttcttatcgtgtcgtgtgtgtcacacaagtacgtattagtttgtgtg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6868562 |
atgcaaagtgattatgtggtgtgtttaataatggttgtgtataagttcagcccttcttatcgtgtcgtgtgtgtcacacaagtacgtattagtttgtgtg |
6868661 |
T |
|
| Q |
315 |
gggacccacccgttttggcataaaaatggctctgaggaaaagaatcaaatcaaataaaataacatacct |
383 |
Q |
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| T |
6868662 |
gggacccacccgttttggc-taaaaatggctctgaggaaaagaatcaaatcaaatcaaataacatacct |
6868729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 424 - 504
Target Start/End: Original strand, 6868728 - 6868808
Alignment:
| Q |
424 |
ctccagaacctgttgttattgttaacgcactaaagattgaatcttcactattgggtaagcaatatattcgattttcatctc |
504 |
Q |
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| T |
6868728 |
ctccagaacctgttgttattgttaacgcactaaagattgaatcttcactattgggtaagcaatatattcgattttgatctc |
6868808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 8e-50; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 14080394 - 14080228
Alignment:
| Q |
19 |
taactaacgtcggaacggatttgaacggtggttttggataagggtgatttgtgtttgggggtatttgagattgggaggaagtggttttgatggagaagtg |
118 |
Q |
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||||||||||| |||||||||| |||||| ||||||||| |||||||| ||||||||||| ||||||||||||| ||||| ||||||||||||||| |
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| T |
14080394 |
taactaacgtctgaacggattttaacggt---tttggataacggtgatttttgtttgggggtttttgagattggga---agtgggtttgatggagaagtg |
14080301 |
T |
|
| Q |
119 |
gttttttagagaagctggtttgagtaggttgtgagtgtaaggaagaaacgttgccgttgagaagagaagccat |
191 |
Q |
| |
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| T |
14080300 |
ctttttttgagaagctggtttgagtgggttgtgggtgtaaggaagaaacgctgccgttgagaagagaagccat |
14080228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 14390422 - 14390256
Alignment:
| Q |
19 |
taactaacgtcggaacggatttgaacggtggttttggataagggtgatttgtgtttgggggtatttgagattgggaggaagtggttttgatggagaagtg |
118 |
Q |
| |
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||||||||||| |||||||||| |||||| ||||||||| |||||||| ||||||||||| ||||||||||||| ||||| ||||||||||||||| |
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| T |
14390422 |
taactaacgtctgaacggattttaacggt---tttggataacggtgatttttgtttgggggtttttgagattggga---agtgggtttgatggagaagtg |
14390329 |
T |
|
| Q |
119 |
gttttttagagaagctggtttgagtaggttgtgagtgtaaggaagaaacgttgccgttgagaagagaagccat |
191 |
Q |
| |
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|||||| ||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
14390328 |
ctttttttgagaagctggtttgagtgggttgtgggtgtaaggaagaaacgctgccgttgagaagagaagccat |
14390256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 231 - 345
Target Start/End: Complemental strand, 14080121 - 14080018
Alignment:
| Q |
231 |
tggtgtgtttaataatggttgtgtataagttcagcccttcttatcgtgtcgtgtgtgtcacacaagtacgtattagtttgtgtggggacccacccgtttt |
330 |
Q |
| |
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||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||| ||||| |||||||||||||| ||||||||| |
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| T |
14080121 |
tggtgtgtttaataatggttgtgtataagttcaacc---cttatcatgtcgtgtgtgtcacac----acgtactagtttgtgtgggg----acccgtttt |
14080033 |
T |
|
| Q |
331 |
ggcataaaaatggct |
345 |
Q |
| |
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||||| ||||||||| |
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| T |
14080032 |
ggcatcaaaatggct |
14080018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 231 - 345
Target Start/End: Complemental strand, 14390149 - 14390046
Alignment:
| Q |
231 |
tggtgtgtttaataatggttgtgtataagttcagcccttcttatcgtgtcgtgtgtgtcacacaagtacgtattagtttgtgtggggacccacccgtttt |
330 |
Q |
| |
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||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||| ||||| |||||||||||||| ||||||||| |
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| T |
14390149 |
tggtgtgtttaataatggttgtgtataagttcaacc---cttatcatgtcgtgtgtgtcacac----acgtactagtttgtgtgggg----acccgtttt |
14390061 |
T |
|
| Q |
331 |
ggcataaaaatggct |
345 |
Q |
| |
|
||||| ||||||||| |
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|
| T |
14390060 |
ggcatcaaaatggct |
14390046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 351 - 498
Target Start/End: Complemental strand, 47150072 - 47149928
Alignment:
| Q |
351 |
gaaaagaatcaaatcaaataaaataacatacctgagctagaaacgttggtggttccagatgaataagctatttctccagaacctgttgttattgttaacg |
450 |
Q |
| |
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|||| ||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||| ||| ||||||| | |
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| T |
47150072 |
gaaatgaatcaaatcaaagaaaataacatacctgagctagaaacgttagtgtttccagatgaagaagctatttctccagaacccattg---ttgttaatg |
47149976 |
T |
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| Q |
451 |
cactaaagattgaatcttcactattgggtaagcaatatattcgatttt |
498 |
Q |
| |
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||||||| |||||||||| |||||||| |||||||||| ||||||||| |
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| T |
47149975 |
cactaaaaattgaatctttactattggataagcaatatcttcgatttt |
47149928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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