View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21393_low_6 (Length: 489)
Name: NF21393_low_6
Description: NF21393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21393_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 178 - 451
Target Start/End: Original strand, 36687529 - 36687812
Alignment:
| Q |
178 |
acattgctatgattagtctcggattcctgtaaccattttctttttacctgattagatttgtttatttaactacatactaccatgtatataaggtatagtc |
277 |
Q |
| |
|
||||||| ||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
36687529 |
acattgccatgataaatctcggattcctgtaaccattttctttttgcctgattagatttgtttatttaactacacactaccatgtatataaggtataatc |
36687628 |
T |
|
| Q |
278 |
gcatatattgcttatg--tagtgaaaggcattatgaaagagttgtagattaatgcataattttcttttgttatttgataataacatcaacgcattgta-- |
373 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36687629 |
acatatattgcttatgtatagtgaaaggcattatgaaagagttgtagattaatgcataattttcttttgttatttgataataacatcaacgcattgtaac |
36687728 |
T |
|
| Q |
374 |
------atttttcatttttgttgtttcaatcgctccatcaacgggacaatttgatgctacttgttgtacttttgtgtttatttg |
451 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36687729 |
tttattatttttcattgttgttgtttcaatcgctccatcaacgggacaatttgatgctacttgttgtacttttgtgtttatttg |
36687812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 35 - 184
Target Start/End: Original strand, 36686913 - 36687066
Alignment:
| Q |
35 |
acgaaagctctaacaatcagaggtgatattgatccttgtatgcttatatgtgttcctaatattgatttgtaatat----cttgtattgataagtatcggt |
130 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36686913 |
acgaaagctctaacaatcagaggtaatattgatccttgtatgcttatatgtgttcctaatattgatttgtaatatcttgcttgtattgataagtatcggt |
36687012 |
T |
|
| Q |
131 |
tactgtgttcattttcgttttgatgagtgtctaactatatacgatatacattgc |
184 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36687013 |
tactgtgttcattttcattttgatgagtgtctaactatatacaatatacattgc |
36687066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 385 - 450
Target Start/End: Complemental strand, 56339834 - 56339768
Alignment:
| Q |
385 |
ttgttgtttcaatcgctccatcaacgggacaatttgatgctac-ttgttgtacttttgtgtttattt |
450 |
Q |
| |
|
|||||||||| || |||| ||||||||||||||||||| |||| ||||||||||||| ||||||||| |
|
|
| T |
56339834 |
ttgttgtttcgatggctctatcaacgggacaatttgatactactttgttgtacttttatgtttattt |
56339768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University