View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21393_low_9 (Length: 350)
Name: NF21393_low_9
Description: NF21393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21393_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 12 - 334
Target Start/End: Complemental strand, 4150140 - 4149818
Alignment:
| Q |
12 |
atgaacaggttttgttcttcaacacaacagtgaatgatcaaacttttcaagctgttaaatgacgaaaagggctcagcacggttatcatcaccactaccat |
111 |
Q |
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| T |
4150140 |
atgaacaggttttgttcttgaacacaacagtgaatgatcaaacttttcaagctgttaaatgacgaaaagggctcagcacggtcatcatcaccactaccat |
4150041 |
T |
|
| Q |
112 |
gaaaggaaaagtattttagacacaagctggttaatgcaggcaaattcagagaagttgggaataatggtgaatgataacaaaattgatcgtttctacaaag |
211 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| || |||||||| |||| ||||||| |
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| T |
4150040 |
gaaaggcaaagtattttagacacaagctggttaatgcaggcaaattcagagaagttgggaataatgatgaaggatgaccaaattgattgtttgtacaaag |
4149941 |
T |
|
| Q |
212 |
ggtaagagatgttaaagtgtcacatgaaacgcagggaagtggatagtgttgatgattaaaggtcgaatctacatctaatagctggacaccgtggtcaaat |
311 |
Q |
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|||||||||||||||||||| |||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4149940 |
ggtaagagatgttaaagtgtgacatgaaacgtagggaagtggatagtgttgataataaaaggtcgaatctacatctaatagctggacaccgtggtcaaat |
4149841 |
T |
|
| Q |
312 |
gcatattttataacccacttgag |
334 |
Q |
| |
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|| |||||||||||||| ||||| |
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| T |
4149840 |
gcgtattttataacccagttgag |
4149818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 12 - 334
Target Start/End: Complemental strand, 4165912 - 4165590
Alignment:
| Q |
12 |
atgaacaggttttgttcttcaacacaacagtgaatgatcaaacttttcaagctgttaaatgacgaaaagggctcagcacggttatcatcaccactaccat |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4165912 |
atgaacaggttttgttcttcaacacaacagtgaatgatcaaacttttcaagctgttaaatgacgaaaagggctcagcacggtcatcatcaccactaccat |
4165813 |
T |
|
| Q |
112 |
gaaaggaaaagtattttagacacaagctggttaatgcaggcaaattcagagaagttgggaataatggtgaatgataacaaaattgatcgtttctacaaag |
211 |
Q |
| |
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|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||| || |||||||| |||| ||||||| |
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| T |
4165812 |
gaaaggcaaagtattttagacacatgctggttaatgcaggcaaattcagagaagttgggaataatgatgaaggatgaccaaattgattgtttgtacaaag |
4165713 |
T |
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| Q |
212 |
ggtaagagatgttaaagtgtcacatgaaacgcagggaagtggatagtgttgatgattaaaggtcgaatctacatctaatagctggacaccgtggtcaaat |
311 |
Q |
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|||||||||||||||||||| |||| ||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4165712 |
ggtaagagatgttaaagtgtgacataaaacgtagggaagtggatagtgttgataataaaaggtcgaatctacatctaatagctggacaccgtggtcaaat |
4165613 |
T |
|
| Q |
312 |
gcatattttataacccacttgag |
334 |
Q |
| |
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|| ||||||||||||||| |||| |
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| T |
4165612 |
gcgtattttataacccacatgag |
4165590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 43863685 - 43863747
Alignment:
| Q |
97 |
catcaccactaccatgaaaggaaaagtattttagacacaagctggttaatgcaggcaaattca |
159 |
Q |
| |
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||||| |||| | ||||||||||||||| |||| | ||||| |||||||||| |||||||||| |
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| T |
43863685 |
catcatcactgcgatgaaaggaaaagtactttaaagacaaggtggttaatgctggcaaattca |
43863747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 52187280 - 52187235
Alignment:
| Q |
119 |
aaagtattttagacacaagctggttaatgcaggcaaattcagagaa |
164 |
Q |
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|||||| |||||| ||||| |||||||||| ||||||||||||||| |
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| T |
52187280 |
aaagtactttagagacaagttggttaatgctggcaaattcagagaa |
52187235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 7976378 - 7976438
Alignment:
| Q |
44 |
aatgatcaaacttttcaagctgttaaatgacgaaaagggctcagcacggttatcatcacca |
104 |
Q |
| |
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|||||||||||| ||||| ||||||||| |||||| ||||||||||| | || ||||||| |
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| T |
7976378 |
aatgatcaaactattcaacttgttaaatgtcgaaaaaggctcagcacgatcattatcacca |
7976438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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