View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21394_high_1 (Length: 893)
Name: NF21394_high_1
Description: NF21394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21394_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 176; Significance: 2e-94; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 597 - 872
Target Start/End: Original strand, 33437508 - 33437783
Alignment:
| Q |
597 |
tatggatatttcatctgttcccagtattggatcacgttcaaagttatcccttgaggaggattttcttcgtacgtaccccaaaaagacacttgaacaattg |
696 |
Q |
| |
|
||||||| | |||||||||||||| ||||| ||||||||||| |||||||||||||||| ||||||||||| | |||||||||||| |||||||||||| |
|
|
| T |
33437508 |
tatggatgtctcatctgttcccaggattggggcacgttcaaaggtatcccttgaggaggactttcttcgtaccttccccaaaaagactcttgaacaattg |
33437607 |
T |
|
| Q |
697 |
catggtacctttgaggatggagtatttgttgtttatgctacaattggtgggctggtagagaatgaagattggtggtatcctgcctgtaaatgtcatagga |
796 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
33437608 |
cactcaacctttgaggatggagtgtttgttgtttatgctacaattggtgggctggttgaccatgaagattggtggtatccagcctgtaaatgccatagga |
33437707 |
T |
|
| Q |
797 |
gtgtgtatgctgattctggtgccttttactgtaatgggtgtgccaagcatgtttttcaaatgatcccaaggtattg |
872 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
33437708 |
gtgtgtctgctgattctggtgcgttttactgtaaggggtgtgccaagcatgtttttcagatggtcccaaggtattg |
33437783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 33436814 - 33436890
Alignment:
| Q |
18 |
tatgtaagggatggtaaggtcaccaagatggttgtttttgagattactgatgcaaggtgatccatgtttccattttt |
94 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33436814 |
tatgtaagggatggtaaggtcaccaagatggttatttttgagattactgatgcaaggtgatccatgtttccattttt |
33436890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 359 - 455
Target Start/End: Original strand, 33437201 - 33437297
Alignment:
| Q |
359 |
ttttaaccctagataaggcttcccttcagaatgtaatgaacaccactcggattttgataaaccctccaatagagcaggctgaccagctcaggaagag |
455 |
Q |
| |
|
|||| |||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||| |
|
|
| T |
33437201 |
tttttaccccagacaaggcatcccttcagaatgtaatgaacaccactcggattttgataaatcctcccatagagcaggctgaccagatcaggaagag |
33437297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 210 - 257
Target Start/End: Original strand, 33437062 - 33437109
Alignment:
| Q |
210 |
tgcctataatcttggtgcagtttgcaaaggttaagatattcagaggta |
257 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
33437062 |
tgcctataatcttggtgcagtttgccaaggtcaagatattcagaggta |
33437109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 170; Significance: 9e-91; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 9e-91
Query Start/End: Original strand, 607 - 872
Target Start/End: Complemental strand, 33614189 - 33613924
Alignment:
| Q |
607 |
tcatctgttcccagtattggatcacgttcaaagttatcccttgaggaggattttcttcgtacgtaccccaaaaagacacttgaacaattgcatggtacct |
706 |
Q |
| |
|
|||||| ||||||| ||||| |||||||||||| ||||||||||||||||||||||||| || |||||||||||||| |||||||||||||| |||| |
|
|
| T |
33614189 |
tcatctattcccaggattgggtcacgttcaaaggtatcccttgaggaggattttcttcgaacataccccaaaaagactcttgaacaattgcactcaacct |
33614090 |
T |
|
| Q |
707 |
ttgaggatggagtatttgttgtttatgctacaattggtgggctggtagagaatgaagattggtggtatcctgcctgtaaatgtcataggagtgtgtatgc |
806 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||| |||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
33614089 |
ttgacgatggagtatttgttgtttattctacaattagtgggctggttgaccatgaagattggtggtatcctgcctgtaaatgccataggagtgtgtcagc |
33613990 |
T |
|
| Q |
807 |
tgattctggtgccttttactgtaatgggtgtgccaagcatgtttttcaaatgatcccaaggtattg |
872 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
33613989 |
tgattctggtgcgttttactgtaaggggtgtgccaagcatgtttttcagatggtcccaaggtattg |
33613924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 33614881 - 33614805
Alignment:
| Q |
18 |
tatgtaagggatggtaaggtcaccaagatggttgtttttgagattactgatgcaaggtgatccatgtttccattttt |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33614881 |
tatgtaagggatggtaaggtcaccaagatggttgtttttgagattactgatgcaaggtcatccatgtttccattttt |
33614805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 350 - 455
Target Start/End: Complemental strand, 33614497 - 33614392
Alignment:
| Q |
350 |
gtcattgtgttttaaccctagataaggcttcccttcagaatgtaatgaacaccactcggattttgataaaccctccaatagagcaggctgaccagctcag |
449 |
Q |
| |
|
||||||| |||| |||| ||| ||||| ||||||||||||||||| ||||||||| ||||||||||||| | ||| |||||||||| |||||| |||| |
|
|
| T |
33614497 |
gtcattgattttttaccccagacaaggcatcccttcagaatgtaataaacaccacttggattttgataaatcttccgatagagcaggatgaccaagtcag |
33614398 |
T |
|
| Q |
450 |
gaagag |
455 |
Q |
| |
|
|||||| |
|
|
| T |
33614397 |
gaagag |
33614392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 210 - 257
Target Start/End: Complemental strand, 33614625 - 33614578
Alignment:
| Q |
210 |
tgcctataatcttggtgcagtttgcaaaggttaagatattcagaggta |
257 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
33614625 |
tgcctataatcttggtgcagtttgccaaggtgaagatattcagaggta |
33614578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 368 - 437
Target Start/End: Original strand, 16159182 - 16159251
Alignment:
| Q |
368 |
tagataaggcttcccttcagaatgtaatgaacaccactcggattttgataaaccctccaatagagcaggc |
437 |
Q |
| |
|
|||||||||| |||||| ||||||| ||||||||||||| ||||||||||| ||||| |||||| |||| |
|
|
| T |
16159182 |
tagataaggcatccctttagaatgtcttgaacaccactcgaattttgataaatcctccgatagaggaggc |
16159251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 763 - 797
Target Start/End: Original strand, 20551251 - 20551285
Alignment:
| Q |
763 |
gattggtggtatcctgcctgtaaatgtcataggag |
797 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
20551251 |
gattggtggtatcctgcctgtaaatgacataggag |
20551285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 763 - 800
Target Start/End: Original strand, 36944450 - 36944487
Alignment:
| Q |
763 |
gattggtggtatcctgcctgtaaatgtcataggagtgt |
800 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
36944450 |
gattggtggtatcctgcctgtaagtgccataggagtgt |
36944487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University