View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21394_high_4 (Length: 448)
Name: NF21394_high_4
Description: NF21394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21394_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 30814158 - 30813918
Alignment:
| Q |
18 |
aaagagactaaacttcttgaaccttaccgtttcagaatgataatttattgttttatagtaggaaagttggacatatttcaaagaaaaatttatcccaact |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
30814158 |
aaagagactaaacttcttgaaccttac-gtttcagaatgata-tttattgttttatagtaggaaagttggacatattgcaaagaaaaatttatcccaact |
30814061 |
T |
|
| Q |
118 |
tcaaatttcatcaaaatgagattagagtagcaagcaccgacataaaaagtagattagaatatttcatgaaaatttaaattatactatatcatgtttcata |
217 |
Q |
| |
|
||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
30814060 |
tcaaattacatcaaaattagattagagtagaaagcaccgacataaaaagtagattagaatatttcatcaaaatttgaattatactatatcatgtttcata |
30813961 |
T |
|
| Q |
218 |
tggtttaattttcaatttatagagggactttagtctaaattag |
260 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
30813960 |
tggtttaattttcaatttaaagaggggctttagtctaaattag |
30813918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 249 - 396
Target Start/End: Complemental strand, 30813897 - 30813750
Alignment:
| Q |
249 |
agtctaaattagaccattacacttgaattgtaacgtgatggacttcattactcgcactctccaattgtaatgcaaaaaacatttgggtttgaattaagga |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
30813897 |
agtctaaattagaccattacacttgaattgtaacgtgagagacttcactactcgcactctccaattgtaatgcaataaacatttgggtttggattaagga |
30813798 |
T |
|
| Q |
349 |
catgtcttctctcgattgaccttgcaacttatcattaattatgaatca |
396 |
Q |
| |
|
|||||||||||| || ||||||||||||||||| ||||||||||||| |
|
|
| T |
30813797 |
tatgtcttctctcaatcgaccttgcaacttatcactaattatgaatca |
30813750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 20 - 260
Target Start/End: Complemental strand, 30819408 - 30819173
Alignment:
| Q |
20 |
agagactaaacttcttgaaccttaccgtttcagaatgataatttattgttttatagtaggaaagttggacatatttcaaagaaaaatttatcccaacttc |
119 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||||||||| | |||| ||||| || ||||||| |||||||||||||||||| |||| |
|
|
| T |
30819408 |
agagactaaacttcttgaaccttacagtttcaaaatgataatttattgttacagagtaagaaagctgtacatattgcaaagaaaaatttatcccgtcttc |
30819309 |
T |
|
| Q |
120 |
aaatttcatcaaaatgagattagagtagcaagcaccga-cataaaaagtagattagaatatttcatgaaaatttaaattatactatatcatgtttcatat |
218 |
Q |
| |
|
||||| | || || ||| |||||||| | ||||||||||| ||||||||||||||| |||| || ||||||| |||||| | ||||||| |
|
|
| T |
30819308 |
aaatt---tgaatattttgcaagaaaagcaagcaaatatcataaaaagtaaattagaatatttcatcaaaacttgaattatattatatcttatttcata- |
30819213 |
T |
|
| Q |
219 |
ggtttaattttcaatttatagagggactttagtctaaattag |
260 |
Q |
| |
|
||||||||||||| || |||||||||| ||||||||||| |
|
|
| T |
30819212 |
--tttaattttcaatctaaagagggacttcggtctaaattag |
30819173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University