View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21394_low_10 (Length: 248)

Name: NF21394_low_10
Description: NF21394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21394_low_10
NF21394_low_10
[»] chr4 (6 HSPs)
chr4 (28-205)||(14088844-14089021)
chr4 (202-248)||(14089402-14089448)
chr4 (142-207)||(23486689-23486754)
chr4 (167-205)||(32011703-32011741)
chr4 (145-209)||(16469175-16469239)
chr4 (168-200)||(24904502-24904534)
[»] chr1 (1 HSPs)
chr1 (140-205)||(39900377-39900442)
[»] chr3 (3 HSPs)
chr3 (142-205)||(4806380-4806443)
chr3 (149-205)||(48086538-48086594)
chr3 (169-207)||(25155410-25155448)
[»] chr7 (4 HSPs)
chr7 (141-207)||(12679801-12679867)
chr7 (29-69)||(12678035-12678075)
chr7 (29-69)||(12679923-12679963)
chr7 (141-204)||(12677909-12677972)
[»] chr6 (1 HSPs)
chr6 (149-210)||(2285897-2285958)
[»] chr8 (1 HSPs)
chr8 (33-65)||(12784520-12784552)
[»] chr5 (1 HSPs)
chr5 (167-207)||(11476955-11476995)


Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 28 - 205
Target Start/End: Complemental strand, 14089021 - 14088844
Alignment:
Q  28 ctctatcaagaattgatggtttgttagtttacctaaaaccaatcaagttacacgttgggggtcaacgtgatttaactcacgttgaggtcaacgtgagata 127  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14089021 ctctatcaagaattgatggtttgttagtttaactaaaaccaatcaagttacacgttgggggtcaacgtgatttaactcacgttgaggtcaacgtgagata 14088922  T
Q  128 actcacatttactctaccgaacgtgagttaactcaagtcgaggttattttaggaagtttgaggtggaaatgagcaaaa 205  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14088921 actcacatttaccctaccgaacatgagttaactcaagtcgaggttattttaggaagtttgaggtggaaatgagcaaaa 14088844  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 202 - 248
Target Start/End: Original strand, 14089402 - 14089448
Alignment:
Q  202 aaaactcaagaatgaagagaactcatctgaagttgcttttagttaca 248  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  14089402 aaaactcaagaatgaagagaacacatctgaagttgcttttagttaca 14089448  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 23486689 - 23486754
Alignment:
Q  142 taccgaacgtgagttaactcaagtcgaggttattttaggaagtttgaggtggaaatgagcaaaact 207  Q
    ||||||||||||| |  |||| || || |||||||||| | |||||||||||||||||||||||||    
T  23486689 taccgaacgtgagatttctcacgttgaagttattttagaatgtttgaggtggaaatgagcaaaact 23486754  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 205
Target Start/End: Complemental strand, 32011741 - 32011703
Alignment:
Q  167 gaggttattttaggaagtttgaggtggaaatgagcaaaa 205  Q
    |||||||||||| |||||||||||||||| |||||||||    
T  32011741 gaggttattttaagaagtttgaggtggaagtgagcaaaa 32011703  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 16469239 - 16469175
Alignment:
Q  145 cgaacgtgagttaactcaagtcgaggttattttaggaagtttgaggtggaaatgagcaaaactca 209  Q
    ||||||||| |||| ||| || |||||||||||||||||  || || || |||||||||||||||    
T  16469239 cgaacgtgacttaagtcacgtggaggttattttaggaagactggggagggaatgagcaaaactca 16469175  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 200
Target Start/End: Original strand, 24904502 - 24904534
Alignment:
Q  168 aggttattttaggaagtttgaggtggaaatgag 200  Q
    |||||||||||||||||||| ||||||||||||    
T  24904502 aggttattttaggaagtttggggtggaaatgag 24904534  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 39900377 - 39900442
Alignment:
Q  140 tctaccgaacgtgagttaactcaagtcgaggttattttaggaagtttgaggtggaaatgagcaaaa 205  Q
    ||||| |||||||| ||||||||||| ||||||||||||| || |||||||||| |||||||||||    
T  39900377 tctactgaacgtgaattaactcaagttgaggttattttagaaaatttgaggtgggaatgagcaaaa 39900442  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 4806380 - 4806443
Alignment:
Q  142 taccgaacgtgagttaactcaagtcgaggttattttaggaagtttgaggtggaaatgagcaaaa 205  Q
    ||||||||||||||||||||| || | |||||||||||||| |||||||||| |||| ||||||    
T  4806380 taccgaacgtgagttaactcatgttggggttattttaggaattttgaggtgggaatgtgcaaaa 4806443  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 48086538 - 48086594
Alignment:
Q  149 cgtgagttaactcaagtcgaggttattttaggaagtttgaggtggaaatgagcaaaa 205  Q
    |||||||||||||| || | |||| |||||| |||||||||||||||||||||||||    
T  48086538 cgtgagttaactcatgttggggttgttttagcaagtttgaggtggaaatgagcaaaa 48086594  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 207
Target Start/End: Complemental strand, 25155448 - 25155410
Alignment:
Q  169 ggttattttaggaagtttgaggtggaaatgagcaaaact 207  Q
    |||||||||||| |||||||||||| |||||||||||||    
T  25155448 ggttattttaggcagtttgaggtgggaatgagcaaaact 25155410  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 207
Target Start/End: Complemental strand, 12679867 - 12679801
Alignment:
Q  141 ctaccgaacgtgagttaactcaagtcgaggttattttaggaagtttgaggtggaaatgagcaaaact 207  Q
    |||||||||||||||||||||| || ||| ||||||| ||||||| || |||  |||||||||||||    
T  12679867 ctaccgaacgtgagttaactcatgttgagattattttcggaagttggaagtgagaatgagcaaaact 12679801  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 12678075 - 12678035
Alignment:
Q  29 tctatcaagaattgatggtttgttagtttacctaaaaccaa 69  Q
    ||||||||||| |||||||||||||| ||||||||||||||    
T  12678075 tctatcaagaactgatggtttgttagcttacctaaaaccaa 12678035  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 12679963 - 12679923
Alignment:
Q  29 tctatcaagaattgatggtttgttagtttacctaaaaccaa 69  Q
    ||||||||||| |||||||||||||| ||||||||||||||    
T  12679963 tctatcaagaaatgatggtttgttagcttacctaaaaccaa 12679923  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 204
Target Start/End: Complemental strand, 12677972 - 12677909
Alignment:
Q  141 ctaccgaacgtgagttaactcaagtcgaggttattttaggaagtttgaggtggaaatgagcaaa 204  Q
    |||||||||||||||||||||| || ||| ||||||| |||| ||||| |||  ||||||||||    
T  12677972 ctaccgaacgtgagttaactcatgttgagattattttcggaaatttgaagtgagaatgagcaaa 12677909  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 210
Target Start/End: Complemental strand, 2285958 - 2285897
Alignment:
Q  149 cgtgagttaactcaagtcgaggttattttaggaagtttgaggtggaaatgagcaaaactcaa 210  Q
    |||||||||||||| || || |||||||||  ||  ||||||||||||||||||||| ||||    
T  2285958 cgtgagttaactcacgttgaagttattttaaaaaaattgaggtggaaatgagcaaaaatcaa 2285897  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 12784552 - 12784520
Alignment:
Q  33 tcaagaattgatggtttgttagtttacctaaaa 65  Q
    |||| ||||||||||||||||||||||||||||    
T  12784552 tcaaaaattgatggtttgttagtttacctaaaa 12784520  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 11476995 - 11476955
Alignment:
Q  167 gaggttattttaggaagtttgaggtggaaatgagcaaaact 207  Q
    |||||||||||||||| ||||| |||| |||||||||||||    
T  11476995 gaggttattttaggaaatttgaagtgggaatgagcaaaact 11476955  T

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