View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21394_low_11 (Length: 239)

Name: NF21394_low_11
Description: NF21394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21394_low_11
NF21394_low_11
[»] chr1 (4 HSPs)
chr1 (71-222)||(39875732-39875883)
chr1 (71-222)||(39890809-39890960)
chr1 (71-222)||(39883855-39884006)
chr1 (1-74)||(14505895-14505968)
[»] chr7 (1 HSPs)
chr7 (1-74)||(18482962-18483035)
[»] chr5 (17 HSPs)
chr5 (1-74)||(42134732-42134805)
chr5 (72-139)||(10652125-10652192)
chr5 (72-139)||(10740622-10740689)
chr5 (72-124)||(10763071-10763123)
chr5 (72-139)||(7193224-7193291)
chr5 (72-130)||(10716872-10716930)
chr5 (72-130)||(10746947-10747005)
chr5 (72-139)||(10588353-10588420)
chr5 (72-139)||(10660008-10660075)
chr5 (72-130)||(10565246-10565304)
chr5 (72-130)||(10604971-10605029)
chr5 (72-139)||(10611929-10611996)
chr5 (72-130)||(10216681-10216739)
chr5 (72-130)||(10559121-10559179)
chr5 (72-125)||(11048594-11048647)
chr5 (72-139)||(19605788-19605855)
chr5 (72-130)||(9836260-9836318)
[»] chr8 (2 HSPs)
chr8 (1-74)||(21030936-21031009)
chr8 (72-124)||(28605842-28605894)
[»] chr6 (6 HSPs)
chr6 (72-149)||(12899789-12899866)
chr6 (71-145)||(12932497-12932571)
chr6 (71-145)||(12948862-12948936)
chr6 (71-145)||(12907408-12907482)
chr6 (72-145)||(12958297-12958370)
chr6 (3-74)||(28521044-28521115)
[»] chr2 (1 HSPs)
chr2 (71-145)||(17923320-17923394)
[»] scaffold0692 (1 HSPs)
scaffold0692 (72-145)||(7512-7585)


Alignment Details
Target: chr1 (Bit Score: 124; Significance: 6e-64; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 71 - 222
Target Start/End: Complemental strand, 39875883 - 39875732
Alignment:
Q  71 accaagcaatgtccttcttgatgacgacatggttgctcatgtgagtgattttggcttagcgagaattgtttcaacaattgatgggaactccaataaacaa 170  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| || |||||||| |||    
T  39875883 accaagcaatgtccttcttgacgatgacatggttgctcatgtgagtgattttggcttagccagacttgtttcaacaattgatggcaaatccaataatcaa 39875784  T
Q  171 accagctcaatgggaataaaggggactataggttatactcctccaggtatgt 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39875783 accagctcaatgggaataaaggggactataggttatactcctccaggtatgt 39875732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 71 - 222
Target Start/End: Complemental strand, 39890960 - 39890809
Alignment:
Q  71 accaagcaatgtccttcttgatgacgacatggttgctcatgtgagtgattttggcttagcgagaattgtttcaacaattgatgggaactccaataaacaa 170  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| || |||||||| |||    
T  39890960 accaagcaatgtccttcttgaagatgacatggttgctcatgtgagtgattttggcttagccagacttgtttcaacaattgatggcaaatccaataatcaa 39890861  T
Q  171 accagctcaatgggaataaaggggactataggttatactcctccaggtatgt 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39890860 accagctcaatgggaataaaggggactataggttatactcctccaggtatgt 39890809  T

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Target: chr1; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 71 - 222
Target Start/End: Complemental strand, 39884006 - 39883855
Alignment:
Q  71 accaagcaatgtccttcttgatgacgacatggttgctcatgtgagtgattttggcttagcgagaattgtttcaacaattgatgggaactccaataaacaa 170  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| || |||||||  |||    
T  39884006 accaagcaatgtccttcttgacgatgacatggttgctcatgtgagtgattttggcttagccagacttgtttcaacaattgatggcaaatccaatattcaa 39883907  T
Q  171 accagctcaatgggaataaaggggactataggttatactcctccaggtatgt 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39883906 accagctcaatgggaataaaggggactataggttatactcctccaggtatgt 39883855  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 14505895 - 14505968
Alignment:
Q  1 tggtgtggttggtgcggttacaaaaggtacaatgtctagatgaatttttctgattgttataatatcctttacca 74  Q
    ||||||| || |||||||||||||||||||| ||||||||||||||||| ||||||  ||||||||||||||||    
T  14505895 tggtgtgattagtgcggttacaaaaggtacagtgtctagatgaatttttatgattgccataatatcctttacca 14505968  T

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Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 18482962 - 18483035
Alignment:
Q  1 tggtgtggttggtgcggttacaaaaggtacaatgtctagatgaatttttctgattgttataatatcctttacca 74  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  18482962 tggtgtggttggtgcggttacaaaaggtacagtgtctagatgaatttttctgattgctataatatcctttacca 18483035  T

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Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 42134805 - 42134732
Alignment:
Q  1 tggtgtggttggtgcggttacaaaaggtacaatgtctagatgaatttttctgattgttataatatcctttacca 74  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  42134805 tggtgtggttggtgcggttacaaaaggtacagtgtctagatgaatttttctgattgctataatatcctttacca 42134732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 10652192 - 10652125
Alignment:
Q  72 ccaagcaatgtccttcttgatgacgacatggttgctcatgtgagtgattttggcttagcgagaattgt 139  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||    
T  10652192 ccaagtaatgtccttcttgatgacgacatggttgctcatgtgagtgattttggcatagcaagacttgt 10652125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 10740689 - 10740622
Alignment:
Q  72 ccaagcaatgtccttcttgatgacgacatggttgctcatgtgagtgattttggcttagcgagaattgt 139  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||| ||||    
T  10740689 ccaagcaatgtccttcttgatgatgacatggttgctcatgtgagtgattttggcatagcaagacttgt 10740622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 10763123 - 10763071
Alignment:
Q  72 ccaagcaatgtccttcttgatgacgacatggttgctcatgtgagtgattttgg 124  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10763123 ccaagcaatgtccttcttgatgatgacatggttgctcatgtgagtgattttgg 10763071  T

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Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 7193224 - 7193291
Alignment:
Q  72 ccaagcaatgtccttcttgatgacgacatggttgctcatgtgagtgattttggcttagcgagaattgt 139  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||| |||| ||| ||||    
T  7193224 ccaagcaatgtccttcttgacgatgacatggttgctcatgtgagtgattttggcatagcaagacttgt 7193291  T

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Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 10716930 - 10716872
Alignment:
Q  72 ccaagcaatgtccttcttgatgacgacatggttgctcatgtgagtgattttggcttagc 130  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||    
T  10716930 ccaagcaatgtccttcttgatgatgacatggttgctcatgtgactgattttggcatagc 10716872  T

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Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 10747005 - 10746947
Alignment:
Q  72 ccaagcaatgtccttcttgatgacgacatggttgctcatgtgagtgattttggcttagc 130  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||    
T  10747005 ccaagcaatgtccttcttgatgatgacatggttgctcatgtgactgattttggcatagc 10746947  T

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Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 10588420 - 10588353
Alignment:
Q  72 ccaagcaatgtccttcttgatgacgacatggttgctcatgtgagtgattttggcttagcgagaattgt 139  Q
    |||||||| ||||||||||| || |||||||||||||||||||||||||||||| |||| ||| ||||    
T  10588420 ccaagcaacgtccttcttgacgatgacatggttgctcatgtgagtgattttggcatagcaagacttgt 10588353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 10660075 - 10660008
Alignment:
Q  72 ccaagcaatgtccttcttgatgacgacatggttgctcatgtgagtgattttggcttagcgagaattgt 139  Q
    ||||| |||||||||||||| || |||||||||||||||||||||||||||||| |||| ||| ||||    
T  10660075 ccaagtaatgtccttcttgacgatgacatggttgctcatgtgagtgattttggcatagcaagacttgt 10660008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 10565246 - 10565304
Alignment:
Q  72 ccaagcaatgtccttcttgatgacgacatggttgctcatgtgagtgattttggcttagc 130  Q
    ||||||||| |||||||||| || |||||||||||||||||||||||||||||| ||||    
T  10565246 ccaagcaatatccttcttgacgatgacatggttgctcatgtgagtgattttggcatagc 10565304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 10604971 - 10605029
Alignment:
Q  72 ccaagcaatgtccttcttgatgacgacatggttgctcatgtgagtgattttggcttagc 130  Q
    |||||||||||||| |||||||| || ||||||||||||||||||||||||||| ||||    
T  10604971 ccaagcaatgtcctacttgatgatgatatggttgctcatgtgagtgattttggcatagc 10605029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 10611929 - 10611996
Alignment:
Q  72 ccaagcaatgtccttcttgatgacgacatggttgctcatgtgagtgattttggcttagcgagaattgt 139  Q
    |||||||||||||| |||||||| || |||||||| |||||||||||||||||| |||| ||| ||||    
T  10611929 ccaagcaatgtcctacttgatgatgatatggttgcacatgtgagtgattttggcatagcaagacttgt 10611996  T

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Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 10216739 - 10216681
Alignment:
Q  72 ccaagcaatgtccttcttgatgacgacatggttgctcatgtgagtgattttggcttagc 130  Q
    ||||||||||| |||||  |||| |||||||||||||||||||||||||||||| ||||    
T  10216739 ccaagcaatgttcttctgaatgatgacatggttgctcatgtgagtgattttggcatagc 10216681  T

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Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 10559121 - 10559179
Alignment:
Q  72 ccaagcaatgtccttcttgatgacgacatggttgctcatgtgagtgattttggcttagc 130  Q
    ||||||||||||||| ||||||| ||||  |||||||||||||||||||||||| ||||    
T  10559121 ccaagcaatgtccttattgatgaagacaatgttgctcatgtgagtgattttggcatagc 10559179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 11048647 - 11048594
Alignment:
Q  72 ccaagcaatgtccttcttgatgacgacatggttgctcatgtgagtgattttggc 125  Q
    ||||| ||||| |||||| | |||||||||||||||||||||||||||||||||    
T  11048647 ccaagtaatgttcttcttaacgacgacatggttgctcatgtgagtgattttggc 11048594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 19605855 - 19605788
Alignment:
Q  72 ccaagcaatgtccttcttgatgacgacatggttgctcatgtgagtgattttggcttagcgagaattgt 139  Q
    ||||||||||||||| |||| ||||| || ||||| |||||||||||||||||| |||| ||| ||||    
T  19605855 ccaagcaatgtccttattgacgacgatatcgttgcacatgtgagtgattttggcatagcaagacttgt 19605788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 9836318 - 9836260
Alignment:
Q  72 ccaagcaatgtccttcttgatgacgacatggttgctcatgtgagtgattttggcttagc 130  Q
    ||||||||  ||||||| |||||  ||||||||||||| ||||||||||||||| ||||    
T  9836318 ccaagcaacatccttctcgatgataacatggttgctcacgtgagtgattttggcatagc 9836260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 21030936 - 21031009
Alignment:
Q  1 tggtgtggttggtgcggttacaaaaggtacaatgtctagatgaatttttctgattgttataatatcctttacca 74  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||  ||||| |||||||||||||||||    
T  21030936 tggtgtggttggtgcggttacaaaaggtacagtgtctagatgaattttttagattgctataatatcctttacca 21031009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 28605842 - 28605894
Alignment:
Q  72 ccaagcaatgtccttcttgatgacgacatggttgctcatgtgagtgattttgg 124  Q
    ||||||||| | |||||| || | |||||||||||||||||||||||||||||    
T  28605842 ccaagcaatattcttcttcataatgacatggttgctcatgtgagtgattttgg 28605894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 72 - 149
Target Start/End: Original strand, 12899789 - 12899866
Alignment:
Q  72 ccaagcaatgtccttcttgatgacgacatggttgctcatgtgagtgattttggcttagcgagaattgtttcaacaatt 149  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||| |||| |||||||||    
T  12899789 ccaagcaatgtccttcttgatgatgacatggttgctcatgtgagtgattttggcatagcaagacttgtctcaacaatt 12899866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 145
Target Start/End: Original strand, 12932497 - 12932571
Alignment:
Q  71 accaagcaatgtccttcttgatgacgacatggttgctcatgtgagtgattttggcttagcgagaattgtttcaac 145  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||| |||| |||||    
T  12932497 accaagcaatgtccttcttgatgatgacatggttgctcatgtgagtgattttggcatagcaagacttgtctcaac 12932571  T

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Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 145
Target Start/End: Original strand, 12948862 - 12948936
Alignment:
Q  71 accaagcaatgtccttcttgatgacgacatggttgctcatgtgagtgattttggcttagcgagaattgtttcaac 145  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||| |||| |||||    
T  12948862 accaagcaatgtccttcttgatgatgacatggttgctcatgtgagtgattttggcatagcaagacttgtctcaac 12948936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 71 - 145
Target Start/End: Original strand, 12907408 - 12907482
Alignment:
Q  71 accaagcaatgtccttcttgatgacgacatggttgctcatgtgagtgattttggcttagcgagaattgtttcaac 145  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||| ||| |||| |||||    
T  12907408 accaagcaatgtccttcttgatgatgacatggttgctcatttgagtgattttggcatagcaagacttgtctcaac 12907482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 145
Target Start/End: Original strand, 12958297 - 12958370
Alignment:
Q  72 ccaagcaatgtccttcttgatgacgacatggttgctcatgtgagtgattttggcttagcgagaattgtttcaac 145  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||  |||| ||| |||| |||||    
T  12958297 ccaagcaatgtccttcttgatggtgacatggttgctcatgtgagtgattttggaatagcaagacttgtctcaac 12958370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 28521044 - 28521115
Alignment:
Q  3 gtgtggttggtgcggttacaaaaggtacaatgtctagatgaatttttctgattgttataatatcctttacca 74  Q
    ||||| || ||||| |||||||| ||||| |||| |||||||||||| ||||||  ||||||||||||||||    
T  28521044 gtgtgatttgtgcgcttacaaaaagtacagtgtcaagatgaatttttttgattgccataatatcctttacca 28521115  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 145
Target Start/End: Complemental strand, 17923394 - 17923320
Alignment:
Q  71 accaagcaatgtccttcttgatgacgacatggttgctcatgtgagtgattttggcttagcgagaattgtttcaac 145  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||| |||| |||||    
T  17923394 accaagcaatgtccttcttgatgatgacatggttgctcatgtgagtgattttggcatagcaagacttgtctcaac 17923320  T

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Target: scaffold0692 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 72 - 145
Target Start/End: Original strand, 7512 - 7585
Alignment:
Q  72 ccaagcaatgtccttcttgatgacgacatggttgctcatgtgagtgattttggcttagcgagaattgtttcaac 145  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||| |||| |||||    
T  7512 ccaagcaatgtccttcttgatgatgacatggttgctcatgtgagtgattttggcatagcaagacttgtctcaac 7585  T

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