View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21394_low_5 (Length: 309)
Name: NF21394_low_5
Description: NF21394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21394_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 16 - 293
Target Start/End: Original strand, 2790495 - 2790769
Alignment:
| Q |
16 |
atgaagattaacaagtctacgagagaagtccatttatcaactagctgtgatgctacaactagctgccctgaatatcaagtcaagtcaattgatttacaaa |
115 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2790495 |
atgaagattaacaagtctatgagagaagtccatttatcaactagctgtgatgctacaactagctgccctgaatatcaagtcaagtcaattgatttacaaa |
2790594 |
T |
|
| Q |
116 |
ctccacaaatcaaaactattgggatggattatgtatgcacttccacatttttacgattgttttctgaatgcgtaaaataacattgtagaggaattcctta |
215 |
Q |
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|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2790595 |
ctccacgaatcaaaactattgggatggattatgtatgcacttccacatttttacgattgttttctgaatgcgtaaaataacattgcagaggaattcctta |
2790694 |
T |
|
| Q |
216 |
ttccacactgacaatatgacatattaccaacaacaaggttgttaatactattcatcaacaatattaggttgactctat |
293 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2790695 |
ttccatactgacaatatgacatattac---caacaaggttgttaatactattcatcaacaatattaggttgactctat |
2790769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 62 - 293
Target Start/End: Original strand, 2832799 - 2833030
Alignment:
| Q |
62 |
gtgatgctacaactagctgccctgaatatcaagtcaagtcaattgatttacaaactccacaaatcaaaactattgggatggattatgtatgcacttccac |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| | |||||||||||||||||||||||||||||| ||||||| |
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| T |
2832799 |
gtgatgctacaactagctgccctgaatatcaagttaagtcaactgatttacaaactccccgaatcaaaactattgggatggattatgtatggacttccaa |
2832898 |
T |
|
| Q |
162 |
atttttacgattgttttctgaatgcgtaaaataacattgtagaggaattccttattccacactgacaatatgacatattaccaacaacaaggttgttaat |
261 |
Q |
| |
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|||||||| ||||||||||||| | ||||||||||| | |||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||| |
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|
| T |
2832899 |
atttttacagttgttttctgaatacataaaataacatcacaaaggaattcctcattccacaatgacaatatgacatattaccaacaagaaggttgttaat |
2832998 |
T |
|
| Q |
262 |
actattcatcaacaatattaggttgactctat |
293 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |
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|
| T |
2832999 |
actatttatcaacaatattaggttgactctat |
2833030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 62 - 293
Target Start/End: Complemental strand, 2840588 - 2840358
Alignment:
| Q |
62 |
gtgatgctacaactagctgccctgaatatca---agtcaagtcaattgatttacaaactccacaaatcaaaactattgggatggattatgtatgcacttc |
158 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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|
| T |
2840588 |
gtgatgctacaactagctgccctgaatattattaagtcaagtcaattaatttacaaactccccaaatcaaaactattggcatggattatgtatgcacttc |
2840489 |
T |
|
| Q |
159 |
cacatttttacgattgttttctgaatgcgtaaaataacattgtagaggaattccttattccacactgacaatatgacatattaccaacaacaaggttgtt |
258 |
Q |
| |
|
||| |||||| ||||||||||||||| ||||||||| || | ||||||||||||||||||| ||||||| ||||||||||| ||||||||||||| |
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|
| T |
2840488 |
taca-ttttacagttgttttctgaatgcataaaataactttacaaaggaattccttattccacaatgacaatttgacatattac---caacaaggttgtt |
2840393 |
T |
|
| Q |
259 |
aatactattcatcaacaatattaggttgactctat |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
2840392 |
aatactattcatcaacaatattaggttgactctat |
2840358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 62 - 293
Target Start/End: Complemental strand, 2845275 - 2845045
Alignment:
| Q |
62 |
gtgatgctacaactagctgccctgaatatca---agtcaagtcaattgatttacaaactccacaaatcaaaactattgggatggattatgtatgcacttc |
158 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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|
| T |
2845275 |
gtgatgctacaactagctgccctgaatattattaagtcaagtcaattaatttacaaactccccaaatcaaaactattggcatggattatgtatgcacttc |
2845176 |
T |
|
| Q |
159 |
cacatttttacgattgttttctgaatgcgtaaaataacattgtagaggaattccttattccacactgacaatatgacatattaccaacaacaaggttgtt |
258 |
Q |
| |
|
||| |||||| ||||||||||||||| ||||||||| || | ||||||||||||||||||| ||||||| ||||||||||| ||||||||||||| |
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|
| T |
2845175 |
taca-ttttacagttgttttctgaatgcataaaataactttacaaaggaattccttattccacaatgacaatttgacatattac---caacaaggttgtt |
2845080 |
T |
|
| Q |
259 |
aatactattcatcaacaatattaggttgactctat |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
2845079 |
aatactattcatcaacaatattaggttgactctat |
2845045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 62 - 293
Target Start/End: Complemental strand, 405904 - 405684
Alignment:
| Q |
62 |
gtgatgctacaactagctgccctgaatatcaagtcaagtcaattgatttacaaactccacaaatcaaaactattgggatggattatgtatgcacttccac |
161 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| | ||||||||||||||| |||||||| |||||||||| || |
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|
| T |
405904 |
gtgatgctacaactagctgccctgaatattaagtcaagtcaattaatttacaaactccccgaatcaaaactattggcatggatta-atatgcacttctac |
405806 |
T |
|
| Q |
162 |
atttttacgattgttttctgaatgcgtaaaataacattgtagaggaattccttattccacactgacaatatgacatattaccaacaacaaggttgttaat |
261 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
405805 |
a-ttttacggttgttttctgaatgcgtaaaataacattgcaaaggaattccttattccaca--------attacatattaccaacaacaaggttgttaat |
405715 |
T |
|
| Q |
262 |
actattcatcaacaatattaggttgactctat |
293 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |
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|
| T |
405714 |
actattcatcaacaata-taggttgactctat |
405684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 62 - 293
Target Start/End: Original strand, 420174 - 420394
Alignment:
| Q |
62 |
gtgatgctacaactagctgccctgaatatcaagtcaagtcaattgatttacaaactccacaaatcaaaactattgggatggattatgtatgcacttccac |
161 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| | ||||||||||||||| |||||||| |||||||||| || |
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|
| T |
420174 |
gtgatgctacaactagctgccctgaatattaagtcaagtcaattaatttacaaactccccgaatcaaaactattggcatggatta-atatgcacttctac |
420272 |
T |
|
| Q |
162 |
atttttacgattgttttctgaatgcgtaaaataacattgtagaggaattccttattccacactgacaatatgacatattaccaacaacaaggttgttaat |
261 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||| || |||||||||||||||||||||||||||| |
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|
| T |
420273 |
a-ttttacggttgttttctgaatgcgtaaaataacattgcaaaggaattccttattccaca--------attacatattaccaacaacaaggttgttaat |
420363 |
T |
|
| Q |
262 |
actattcatcaacaatattaggttgactctat |
293 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |
|
|
| T |
420364 |
actattcatcaacaata-taggttgactctat |
420394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 62 - 293
Target Start/End: Complemental strand, 24182399 - 24182179
Alignment:
| Q |
62 |
gtgatgctacaactagctgccctgaatatcaagtcaagtcaattgatttacaaactccacaaatcaaaactattgggatggattatgtatgcacttccac |
161 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| | ||||||||||||||| |||||||| |||||||||| || |
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|
| T |
24182399 |
gtgatgctacaactagctgccctgaatattaagtcaagtcaattaatttacaaactccccgaatcaaaactattggcatggatta-atatgcacttctac |
24182301 |
T |
|
| Q |
162 |
atttttacgattgttttctgaatgcgtaaaataacattgtagaggaattccttattccacactgacaatatgacatattaccaacaacaaggttgttaat |
261 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||| || |||||||| ||||||||||||||||||| |
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|
| T |
24182300 |
a-ttttacggttgttttctgaatgcgtaaaataacattgcaaaggaattccttattccaca--------attacatattagcaacaacaaggttgttaat |
24182210 |
T |
|
| Q |
262 |
actattcatcaacaatattaggttgactctat |
293 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |
|
|
| T |
24182209 |
actattcatcaacaata-taggttgactctat |
24182179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 62 - 291
Target Start/End: Original strand, 24359901 - 24360119
Alignment:
| Q |
62 |
gtgatgctacaactagctgccctgaatatcaagtcaagtcaattgatttacaaactccacaaatcaaaactattgggatggattatgtatgcacttccac |
161 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||| | |||||||| |||||| |||||||| |||||||||| || |
|
|
| T |
24359901 |
gtgatgctacaattagctgccctgaatattaagtcaagtcaattaatttacaaactccccgaatcaaaattattggcatggatta-atatgcacttctac |
24359999 |
T |
|
| Q |
162 |
atttttacgattgttttctgaatgcgtaaaataacattgtagaggaattccttattccacactgacaatatgacatattaccaacaacaaggttgttaat |
261 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||| || |||||||| ||||||||||||||||||| |
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|
| T |
24360000 |
a-ttttacggttgttttctgaatgcgtaaaataacattgcaaaggaattccttattccaca--------attacatattatcaacaacaaggttgttaat |
24360090 |
T |
|
| Q |
262 |
actattcatcaacaatattaggttgactct |
291 |
Q |
| |
|
||||||||||||||||| |||||||||||| |
|
|
| T |
24360091 |
actattcatcaacaata-taggttgactct |
24360119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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