View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21394_low_7 (Length: 257)
Name: NF21394_low_7
Description: NF21394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21394_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 14087571 - 14087815
Alignment:
| Q |
1 |
ttttataagaactacacggatgtggtgatgtcactcacattgannnnnnnngggttttgaatcttcattttgtactcattttatggagttgatctttact |
100 |
Q |
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| T |
14087571 |
ttttataagaactacacggatgtggtgatgtcactcacattgattttttttgggttttgaatcttcattttgtactcattttatggagttgatctttact |
14087670 |
T |
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| Q |
101 |
ccatttaacttgccttaatttatcccatttcaatttataaatgtgcgacacgtggaaaaaatataaccaaaggttaggattaaatggtttnnnnnnngct |
200 |
Q |
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| T |
14087671 |
ccatttaactttcctcaatttaccccatttcaatttataaatgtgcgacacgtggaaaaaatataaccaaaggctaggattaaatggtttaaaaaaagct |
14087770 |
T |
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| Q |
201 |
gaaaagcaaaacacacgtttccttcttcttctttcctcttatcat |
245 |
Q |
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| T |
14087771 |
gaaaagcaaaacacacgtttccttcttcttctttcctcttatcat |
14087815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 92 - 186
Target Start/End: Complemental strand, 21857600 - 21857506
Alignment:
| Q |
92 |
atctttactccatttaacttgccttaatttatcccatttcaatttataaatgtgcgacacgtggaaaaaatataaccaaaggttaggattaaatg |
186 |
Q |
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| T |
21857600 |
atctttgctccatttacctttcctcaatttatcccattttaagttatagatgtctgacacgtggaaaaaatacaaccaaaggctaggattaaatg |
21857506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 92 - 186
Target Start/End: Complemental strand, 21913463 - 21913369
Alignment:
| Q |
92 |
atctttactccatttaacttgccttaatttatcccatttcaatttataaatgtgcgacacgtggaaaaaatataaccaaaggttaggattaaatg |
186 |
Q |
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| T |
21913463 |
atctttgctccatttacctttcctcaatttatcccattttaagttatagatgtctgacacgtggaaaaaatacaaccaaaggctaggattaaatg |
21913369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 186
Target Start/End: Complemental strand, 3464984 - 3464890
Alignment:
| Q |
92 |
atctttactccatttaacttgccttaatttatcccatttcaatttataaatgtgcgacacgtggaaaaaatataaccaaaggttaggattaaatg |
186 |
Q |
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| T |
3464984 |
atctttgctccatttacctttcctcaattttttccattttaagttatagatgtgtgacacgtggaaaaaatacaaccaaaagctaggattaaatg |
3464890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 170
Target Start/End: Original strand, 24484789 - 24484867
Alignment:
| Q |
92 |
atctttactccatttaacttgccttaatttatcccatttcaatttataaatgtgcgacacgtggaaaaaatataaccaa |
170 |
Q |
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| T |
24484789 |
atctttgctccatttaagattcctcaatttatcctatttcaagttatagatgtgtgacatgtggaaaaaataaaaccaa |
24484867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 170
Target Start/End: Original strand, 39310402 - 39310480
Alignment:
| Q |
92 |
atctttactccatttaacttgccttaatttatcccatttcaatttataaatgtgcgacacgtggaaaaaatataaccaa |
170 |
Q |
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| T |
39310402 |
atctttgctccatttaagattcctcaatttatcccatttcaagttatagatgtatgacatgtggaaaaaataaaaccaa |
39310480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 178
Target Start/End: Complemental strand, 40720400 - 40720314
Alignment:
| Q |
92 |
atctttactccatttaacttgccttaatttatcccatttcaatttataaatgtgcgacacgtggaaaaaatataaccaaaggttagg |
178 |
Q |
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| T |
40720400 |
atctttgctccatttacctttcctcaatttttcctattttaagttatagatgtgtgacacgtggaaaaaatacaaccaaaggctagg |
40720314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 120073 - 120150
Alignment:
| Q |
86 |
gagttgatctttactccatttaacttgccttaatttatcccatttcaatttataaatgtgcgacacgtggaaaaaata |
163 |
Q |
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| T |
120073 |
gagttcatctttgctccatttagctttcctcaatttaccccatttcaagttatagatgcgtgacatatggaaaaaata |
120150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 23606959 - 23606923
Alignment:
| Q |
211 |
acacacgtttccttcttcttctttcctcttatcatca |
247 |
Q |
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| T |
23606959 |
acacacgtttccttcttcttatttcctcttatcatca |
23606923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 186
Target Start/End: Complemental strand, 23607360 - 23607321
Alignment:
| Q |
147 |
gacacgtggaaaaaatataaccaaaggttaggattaaatg |
186 |
Q |
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| T |
23607360 |
gacacgtggaaaaaatacaaccaaaggctaggattaaatg |
23607321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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