View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21394_low_8 (Length: 248)
Name: NF21394_low_8
Description: NF21394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21394_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 5972066 - 5971986
Alignment:
| Q |
19 |
ctaagatcgggaggggggtagcaattgagctttgcctccaaaagtgact-gcttcaaaaaccaaccccaagaaaaacaaca |
98 |
Q |
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| T |
5972066 |
ctaagatcgggaggggggtagcaattgagctttgcctccaaaagtgactggcttcaaaaaccaaccccaagaaaagcaaca |
5971986 |
T |
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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 240
Target Start/End: Complemental strand, 5971923 - 5971844
Alignment:
| Q |
161 |
atattccctcccaatctctatctctcagcagcgtgccaccacatacacaccgtcaaccaccgccagtccaaccttcatct |
240 |
Q |
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| T |
5971923 |
atattccctcccaatctccatctcttagccgcgtgccaccacatacacaccggcaaccaccgccagtccaacctccatct |
5971844 |
T |
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