View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21395_high_15 (Length: 249)
Name: NF21395_high_15
Description: NF21395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21395_high_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 54859501 - 54859261
Alignment:
| Q |
1 |
cagtagcggaattgtagttgaatcgacagaagaaatcatcatcaccaacaacatcaagcttcatgtagttcttcaaactgtgaacagtacattttccttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
54859501 |
cagtagcggaattgtagttgaatcgacagaagaaatcatcatcaccaacaacatcaagcttcatgtacttcttcaaactgtgaacagtacattttccttc |
54859402 |
T |
|
| Q |
101 |
gattgtatcaacactctgaacatcaaaatgatcagatagaataagctcctttgagccatggaaatgacgccgacccttctttgtctcctccggccagtaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54859401 |
gattgtatcaacactctgaacatcaaaatgatcagatagaataagctcctttgagccatggaaatgacgccgacccttctttgtctcctccggccagtaa |
54859302 |
T |
|
| Q |
201 |
taccaacggacacgaacgtctcgtgaatcagctttcatctc |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54859301 |
taccaacggacacgaacgtctcgtgaatcagctttcatctc |
54859261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 54853881 - 54853725
Alignment:
| Q |
1 |
cagtagcggaattgtagttgaatcgacagaagaaatcatcatcaccaacaacatcaagcttcatgtagttcttcaaactgtgaacagtacattttccttc |
100 |
Q |
| |
|
||||||| |||||||| | |||||||||||||||||||||| ||||||| |||||||||| ||||| |||| |||| |||||| ||| |||||||| |
|
|
| T |
54853881 |
cagtagcagaattgtactcaaatcgacagaagaaatcatcattaccaacagcatcaagcttagtgtagctcttgaaaccatgaacaacacactttccttc |
54853782 |
T |
|
| Q |
101 |
gattgtatcaacactctgaacatcaaaatgatcagatagaataagctcctttgagcc |
157 |
Q |
| |
|
||||||||| |||||||||||||||||||||| || |||| |||||| |||||||| |
|
|
| T |
54853781 |
aattgtatcagcactctgaacatcaaaatgatctgacagaaaaagctcttttgagcc |
54853725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 38474817 - 38474728
Alignment:
| Q |
43 |
caccaacaacatcaagcttcatgtagttcttcaaactgtgaacagtacattttccttcgattgtatcaacactctgaacatcaaaatgat |
132 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||| |||| ||| ||| || ||||| ||||| ||| |||| ||||||||| |||||| |
|
|
| T |
38474817 |
cacctacaacttcaagcttcatgtagttcttcaaattgtgcacaaaacacttcccttcaattgtgtcagcactatgaacatcataatgat |
38474728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University